PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002671.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 307aa MW: 33025.3 Da PI: 8.9908

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002671.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ FANhyb_rscf00002671.1.g00001.1 24 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 84 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.8E-34	26	82	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGSTTAVGAS RLMEKPGQEQ LQQQQQALKC PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR 60 YWTRGGTLRN VPVGGGCRKN KRVKRPSSTS AVDNGASSSA SSAPNSGNNS NPNPQIDLAS 120 NSNHQHMNPL FYQPDHMGIN PFTTSGFDQF SALGLGFGDQ RFNPAATSKQ IQDLVAANSF 180 HSSNHSIFSS TSYSTAPTMA SVLASKFING GFKDVRGNNN QYFQNLLPFE DLQIAGAGNG 240 GGGGEAVKEV KVEDGGQSRM GWSTNHQANT EQMGFSSDPT LYWISSNLGA NNWHDPANLG 300 SSVSSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293840.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A2P6Q4A3	0.0	A0A2P6Q4A3_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004293840.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-37	Dof family protein