PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002311.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 410aa    MW: 44162 Da    PI: 8.7281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002311.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15240285555
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  FANhyb_rscf00002311.1.g00001.1 240 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 285
                                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-18233296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17240292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-17240289No hitNo description
PfamPF000102.7E-13240285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-18241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MHRSDYEVAE LTWENGQVAM HGLGLPRLPS KPPSWDKPRA TGTLESIVNQ ATGTNLPPFS  60
KLPFDNTLTS ATGGGTNNEL VTWFDHHRSV ATSGAPSNTV TMDALVPCRN NQPDEPNSSH  120
LIDSLVSVPG VLGSSGTGLI NGCSTRVGSC SVAAAHGENT RRMEKHAASV ARVPSTPEWN  180
SRSPSVSGSA TFGLDSQQVT LDTKGSDRDS REASDEEERK KRCTGKSSVS TKRSRAAAIH  240
NQSERKRRDK INQRMKTLQK LVPNSSKTDK ASMLDEVIEY LKQLQAQVHV ISRMNMPAMM  300
LPMAMQQQLQ MSMMAPRNMG MGIGMGMGMP GIGMDMNNIA LPNIAGVPPV LHPTAFMAPM  360
TSWDGSAGGA DPLSAYLACQ SQPMSMEAYS MMAAMYQQFH QQPAPSSSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248ERKRRD
2244249RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289799.10.0PREDICTED: transcription factor UNE10
SwissprotQ8GZ382e-79UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2P6SFM70.0A0A2P6SFM7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289799.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]