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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00002254.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 37852.2 Da PI: 7.0122 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.7e-08 | 176 | 223 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k a +L + ++Y++sLq FANhyb_rscf00002254.1.g00002.1 176 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 223 8*************************9....55599***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.25E-10 | 170 | 227 | No hit | No description |
SuperFamily | SSF47459 | 1.26E-16 | 170 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.212 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 172 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-5 | 176 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 178 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAAFSFQHLL HHPFLFDSIL FPGTPNSTNT NNLHFSQSHY PSEPLVEQMN IPGDQSARVA 60 ESSSCIDQSS AKIATFSDNE PSVTEKQSPE SSSVVDKLET GEQVTQKVTT PIERKRRTRN 120 SSSPSSAQSK VKKQKKAEEE KKSKAEKKEQ KKAVQEVEPP TGYIHVRARR GQATDSHSLA 180 ERVRREKISE RMKMLQRLVP GCDKVTGRAV MLDEIINYVQ SLQNQVEFLS MKLASVNPMF 240 YEFGPDLGDL MVKQEASPFS TGPQCSPTQP TNFADTSTTA ATTTFTAATN NYPFLDSLLH 300 QSPRPTAFHQ DNESLLWDGE DQRQSFLNPS GFNNLCSFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 134 | RKRRTRNSSSPSSAQSKVKKQK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298536.2 | 0.0 | PREDICTED: transcription factor bHLH137 | ||||
TrEMBL | A0A2P6P4N1 | 0.0 | A0A2P6P4N1_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004298536.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4182 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 4e-56 | bHLH family protein |