PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001727.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 578aa    MW: 66289.8 Da    PI: 5.9334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001727.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-14403454155
                                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     ++ +hn+ Er RR++iN+ ++ Lr+l+P +   ++k+ls  +++ ++ +YI +Lq
  FANhyb_rscf00001727.1.g00002.1 403 KKLNHNASERDRRKKINNLYSSLRSLVPAD---HAKRLSIPATVSRVLKYIPELQ 454
                                     6789**************************...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.101.2E-51088IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.35E-71093IPR017986WD40-repeat-containing domain
PfamPF081591.6E-12254281IPR012580NUC153
PROSITE profilePS5088814.062402453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13403471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14403472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11403454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-10403458No hitNo description
SMARTSM003531.6E-9408459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009561Biological Processmegagametogenesis
GO:0005730Cellular Componentnucleolus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MIHQLLQPVV LIYDLRSSHP IQVKDHMYGS PILDIKWHQT LNSERPKLIT TDSHVVRIWD  60
PDTGEGMTSI EPTAGAINDI CTFPGSGLML LALDCSQIPS YFIPELGPAP NWCSYLQNLT  120
EELEEGAQTT IYDNFKFLTK EELERLRLTK LIGTNLLRAY MHGYFVRYSL YKKAKAMVEP  180
FDYSEYIEQQ KKQKLEKEFA GQRITKKRKL PKVNQQLAVK LLEYEETENE TRDENETNKP  240
SKKKKALDKN IFEDERFKAI FEDKDFEIDE YSQEYKALHP VSSNKRASLV EEHFRPIMED  300
EDENHSDATS EDEPEYGNSR IKGKGRAPSN LISHTMLALS PLFSTIGWPL EDHSISHDHN  360
NYYSAESSLL HFPTTLQPQF DQLDHSTPST AVSGESNISS MVKKLNHNAS ERDRRKKINN  420
LYSSLRSLVP ADHAKRLSIP ATVSRVLKYI PELQQQVEGL IQKRDELLSN MSKQENVILQ  480
EEKQLQSTAR RSGSSLSAVS TSRLSDTEVA IQISTVKSTH NIISRILQSL EEDGLEILNA  540
STFESSGGRV FYDLHLQVDM FYRLECENLS QKLMSFYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wlc_LV2e-4912285254510Enp2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190209KKQKLEKEFAGQRITKKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290410.10.0PREDICTED: nucleolar protein 10
TrEMBLA0A2P6PQU80.0A0A2P6PQU8_ROSCH; Putative transcription factor WD40-like family
STRINGXP_004290410.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-50bHLH family protein