PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001690.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 498aa MW: 53754.6 Da PI: 5.0496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001690.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	40	93	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 +g+WT+ Ed +l ++vk++G g+W+++ + g Rt++++k++w++ FANhyb_rscf00001690.1.g00002.1 40 KGPWTAAEDSILMEYVKKHGEGNWNAVQKNSGlarcckscRLRTDNEIKNYWNT 93 79************************************99********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.308	35	99	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-12	37	91	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-16	37	98	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-12	39	97	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-12	40	93	IPR001005	SANT/Myb domain
CDD	cd00167	2.19E-10	42	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MIMSHSGDGS MDLSEMVAAA SQFGGGGHHQ LHQPLRGLKK GPWTAAEDSI LMEYVKKHGE 60 GNWNAVQKNS GLARCCKSCR LRTDNEIKNY WNTRMKRRQR AGLPIYPHEL QHEGATAPFH 120 HQQAHHQQQQ QQRHNSNSSS SFSSLLSSSH PRKANYSSTP SLSLYDHISL DAPLQNHLNS 180 PSLNYSNPAM TAQFNANGGF AIPLSPVSPV SPFGSSSSAL FNQTTFPNQT VLSTPSQYYN 240 SGHGGFGNYS TLTLSSMIMG TPTYEPMNSE LPSNQTTPPY SPYTPTKPAS SSANFNGGEG 300 VMETASGNTN GYEIETVTSP GKRGSGLLDD VLVQAGTLSR NKRSRSGDSS SGESGKDKYI 360 VEEDVESAGQ EEEEDNVQEE STWKSSGENS AENLRDGSSS PSVGMKPSED PLGDMDDDLL 420 SLLNFQNSAP VSESWYGGSI SDQASPGMIG ASDINVSLDV QQNTSTYAST VNMSAAEPDD 480 EIKRSLPPCF WNNMPDIC

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MIMSHSGDGS MDLSEMVAAA SQFGGGGHHQ LHQPLRGLKK GPWTAAEDSI LMEYVKKHGE  60
GNWNAVQKNS GLARCCKSCR LRTDNEIKNY WNTRMKRRQR AGLPIYPHEL QHEGATAPFH  120
HQQAHHQQQQ QQRHNSNSSS SFSSLLSSSH PRKANYSSTP SLSLYDHISL DAPLQNHLNS  180
PSLNYSNPAM TAQFNANGGF AIPLSPVSPV SPFGSSSSAL FNQTTFPNQT VLSTPSQYYN  240
SGHGGFGNYS TLTLSSMIMG TPTYEPMNSE LPSNQTTPPY SPYTPTKPAS SSANFNGGEG  300
VMETASGNTN GYEIETVTSP GKRGSGLLDD VLVQAGTLSR NKRSRSGDSS SGESGKDKYI  360
VEEDVESAGQ EEEEDNVQEE STWKSSGENS AENLRDGSSS PSVGMKPSED PLGDMDDDLL  420
SLLNFQNSAP VSESWYGGSI SDQASPGMIG ASDINVSLDV QQNTSTYAST VNMSAAEPDD  480
EIKRSLPPCF WNNMPDIC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289172.1	0.0	PREDICTED: transcription factor GAMYB
TrEMBL	A0A2P6S287	0.0	A0A2P6S287_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004289172.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9949	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	4e-36	myb domain protein 101