PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001689.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 292aa MW: 33285.1 Da PI: 6.9545

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001689.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.7	7e-30	5	77	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++ g+kk Lvfy g+apkg+kt+W+mheyrl FANhyb_rscf00001689.1.g00002.1 5 GEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKHIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 77 579**********************************98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.608	1	104	IPR003441	NAC domain
SuperFamily	SSF101941	7.85E-36	3	104	IPR003441	NAC domain
Pfam	PF02365	1.4E-14	9	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KHIGKPKALG IKKALVFYAG 60 KAPKGVKTNW IMHEYRLANV DRSASKKNHN LRLDDWVLCR IYNKKGSIEK YNTATVERNR 120 FPTYSEIMDH EEKPELKNIQ FNVAPSQVQQ MPSAVAPVTQ HTDVLSGDYS APRLQHTQHT 180 TDYSSCSDHV FSPEVQSEFQ WSSSPEFSEL DNSMNMNFLE SNDQFNYMDG FSLADIDDPF 240 GNQAQAQAQT QYQMDQQDLF ILCEYAMSPI SGYQGPGSLS SKLNENEKLR KA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	2	110	66	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	2	110	66	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	2	110	66	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	2	110	66	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	2	110	69	174	NAC domain-containing protein 19
3swm_B	2e-49	2	110	69	174	NAC domain-containing protein 19
3swm_C	2e-49	2	110	69	174	NAC domain-containing protein 19
3swm_D	2e-49	2	110	69	174	NAC domain-containing protein 19
3swp_A	2e-49	2	110	69	174	NAC domain-containing protein 19
3swp_B	2e-49	2	110	69	174	NAC domain-containing protein 19
3swp_C	2e-49	2	110	69	174	NAC domain-containing protein 19
3swp_D	2e-49	2	110	69	174	NAC domain-containing protein 19
4dul_A	2e-49	2	110	66	171	NAC domain-containing protein 19
4dul_B	2e-49	2	110	66	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288488.1	0.0	PREDICTED: NAC domain-containing protein 2-like
Swissprot	Q39013	2e-74	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A0E3UPZ1	1e-168	A0A0E3UPZ1_ROSCH; Putative NAC-4 protein
STRING	XP_004288488.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	3e-76	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]