PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001641.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 686aa    MW: 77119.9 Da    PI: 8.5689
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001641.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.45.4e-1103096831373
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     l++lL+ cA+avs +d +   +lL+++++++sp gd  qRla++f+++L+ar+a++++++    ++ ++++++ +e l+
  FANhyb_rscf00001641.1.g00001.1 309 LRNLLILCAQAVSVNDYRTSAELLKQIRQHSSPFGDGSQRLAHFFANGLEARMAGTGTGTQIFYTSLASKKTSAVEILK 387
                                     6899***************************************************8888876667777777779***** PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156
                                     ++++    +P+ ++s +  N++I + +e+++++Hi+Df+i +G+QWp L+++L+ Rp+gpp+lRiTg++ p++g   +e
  FANhyb_rscf00001641.1.g00001.1 388 SYQVSLASCPFKRMSIFFKNKMIFKMAEKATTLHIVDFGILYGFQWPILIHKLSMRPGGPPKLRITGIEVPQPGfrPAE 466
                                     *************************************************************************9*99** PP

                            GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                      +eetg+rLak++e+++vpfefn+++++++e++++e+L+v+++E+laVn++l+ ++llde+v+++ +rd+vLkl++sl+
  FANhyb_rscf00001641.1.g00001.1 467 WIEETGRRLAKYCERFKVPFEFNAIASQNWESIKVEDLKVERNEVLAVNCMLRFKNLLDETVEVNCPRDSVLKLIRSLK 545
                                     *************************999*************************************************** PP

                            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                     P+++v++  +  +n++ F++rf eal ++sal+d +++++pr++ +r + E+e+ gre++nv+aceg er+er et+++
  FANhyb_rscf00001641.1.g00001.1 546 PDIFVHTIINGAYNAPFFVTRFREALFHFSALYDVFDVNIPRDNPQRLMFEAEFYGREAMNVIACEGIERVERAETYKQ 624
                                     ******************************************************************************* PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                     W+ r ++aG+k +pl+++ +k  +  +++ + + ++++++s+++++gWk+r +++ S+W
  FANhyb_rscf00001641.1.g00001.1 625 WQVRTQRAGLKLLPLDQELVKVFRDKVKEWYHKDFTIDQDSNWMLQGWKGRIVYASSCW 683
                                     *******************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.955283664IPR005202Transcription factor GRAS
PfamPF035141.9E-107309683IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
IHSHQISNNN NHNNNSKHFM LINPTGQPLY VDQKVESPDD YFAGSSSDFN ASSSSPSTGS  60
SNSADYQSRG ESGEQKPSFS QTCLSSDSVN HSTSNSQPSL PLTNSLSTFG DGMSESSVNQ  120
FLAQNIFTDS ESVLQFQRGV EEASKFLPKV NPLVIDLESS RVSPEVKGHA STVVVKKEKS  180
ERKTSPSKRR GRRNSPNGSM ERKKSPNGSK GRKNHEREDV DSEGRSSKQS AVFKEEVEEE  240
EELSELFDKV LLCTDGGNQS SCGSCGDNVD VKNEESKNLQ PNGQPLASNG EGGKARAKKQ  300
GKKKETVDLR NLLILCAQAV SVNDYRTSAE LLKQIRQHSS PFGDGSQRLA HFFANGLEAR  360
MAGTGTGTQI FYTSLASKKT SAVEILKSYQ VSLASCPFKR MSIFFKNKMI FKMAEKATTL  420
HIVDFGILYG FQWPILIHKL SMRPGGPPKL RITGIEVPQP GFRPAEWIEE TGRRLAKYCE  480
RFKVPFEFNA IASQNWESIK VEDLKVERNE VLAVNCMLRF KNLLDETVEV NCPRDSVLKL  540
IRSLKPDIFV HTIINGAYNA PFFVTRFREA LFHFSALYDV FDVNIPRDNP QRLMFEAEFY  600
GREAMNVIAC EGIERVERAE TYKQWQVRTQ RAGLKLLPLD QELVKVFRDK VKEWYHKDFT  660
IDQDSNWMLQ GWKGRIVYAS SCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-462926851379Protein SCARECROW
5b3h_D1e-462926851379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461310.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2P6QJ090.0A0A2P6QJ09_ROSCH; Putative transcription factor GRAS family
STRINGXP_004295968.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]