PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001614.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 184aa MW: 20989.9 Da PI: 6.2767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001614.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H FANhyb_rscf00001614.1.g00003.1 29 YECTFCKRGFTNAQALGGHMNIH 51 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.5E-6	13	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.61E-7	25	55	No hit	No description
SMART	SM00355	0.0097	29	51	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.468	29	56	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MESWTVPLSP ETSSDEERDE NSGTAKRSYE CTFCKRGFTN AQALGGHMNI HRKDRAKAKQ 60 LSNQYRSNED YISMSASQFS APIYTQPASG YYPVLGHHEH HVQRNYHQMC YQPSESSPRF 120 YSSMDDDSMS SQSSVSHHVN QELWGANLSL KFSPAGRMED DDFRMGVRNH EEVDLELRLG 180 HGGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288458.1	1e-137	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A2P6QQI0	1e-114	A0A2P6QQI0_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004288458.1	1e-136	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	1e-17	C2H2 family protein