PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001574.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 737aa MW: 83535 Da PI: 6.6225

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001574.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.5	9.5e-17	647	692	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++++ledl+ yF+l+i++A+ +L + + ++Kr CR++G+ RWP+Rk FANhyb_rscf00001574.1.g00002.1 647 ASMKLEDLRVYFHLSIEEASEKLRLPVAIVKRLCRKFGVCRWPSRK 692 6899*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.811	631	717	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-14	649	692	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MIAASVSSLK RPLQSSHIGF FMKSLILDAP GEIPDFGRSC SFKGTNIYQH FSVLAALPVT 60 FGPRITTLHH TLNLEIYLTK EPIPSIHFHH RRACMADTPW GVVPEVSDRL SFMNDFFKLS 120 PKNIPDLFDD VIPPPSPHYD PHGQNMNYLT PFDSPMCNFG NNANMPSDVR GEGGESNTNP 180 LEPIVSLTDH QMYEARSASN SVDDDPLHIL RAEAEAGINP LAEIFGRRSR ILLEDHLQIL 240 PAANHPSQLY GAGESVSNPL DDHPMPIFRA GGESSINPLA EIFERRSTIL LEDPLQILPV 300 TNQPSQLFGV GESVSNQQDD HLMPIFRAGG ESSITPPTEI FGRRRSTILL KHPLQILHAE 360 NHPLQLYEAK ESVSNALDDH PIPIFGAGGE LTINPLAEIF GERKNAVLLG HHSSLDDHPE 420 HISRVEGELS LGRNLNHNPE SFRNNNMLPP LLMDQLSRQP IHSNCIGCHV LKEVLYYNHN 480 YFIKLEIHGK WGVICHAIQE RRASVLNNYG ACKEPIYERF DFHSKSLNEV KHFLTHYCEE 540 RKAEGYIRQP DHVQSFLQGF YVAMEDEDEW EEVLSYPEEF IYEVLDIGDF GPPNANAMER 600 LLVDKASSSK GKGKMRGRPP KLHRFYLAEQ RERAAKMKLD AQRERAASMK LEDLRVYFHL 660 SIEEASEKLR LPVAIVKRLC RKFGVCRWPS RKQLKAISKE ISSLQHMLLS YRKGTRDYIA 720 ARIESLEKER AILLHYS

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MIAASVSSLK RPLQSSHIGF FMKSLILDAP GEIPDFGRSC SFKGTNIYQH FSVLAALPVT  60
FGPRITTLHH TLNLEIYLTK EPIPSIHFHH RRACMADTPW GVVPEVSDRL SFMNDFFKLS  120
PKNIPDLFDD VIPPPSPHYD PHGQNMNYLT PFDSPMCNFG NNANMPSDVR GEGGESNTNP  180
LEPIVSLTDH QMYEARSASN SVDDDPLHIL RAEAEAGINP LAEIFGRRSR ILLEDHLQIL  240
PAANHPSQLY GAGESVSNPL DDHPMPIFRA GGESSINPLA EIFERRSTIL LEDPLQILPV  300
TNQPSQLFGV GESVSNQQDD HLMPIFRAGG ESSITPPTEI FGRRRSTILL KHPLQILHAE  360
NHPLQLYEAK ESVSNALDDH PIPIFGAGGE LTINPLAEIF GERKNAVLLG HHSSLDDHPE  420
HISRVEGELS LGRNLNHNPE SFRNNNMLPP LLMDQLSRQP IHSNCIGCHV LKEVLYYNHN  480
YFIKLEIHGK WGVICHAIQE RRASVLNNYG ACKEPIYERF DFHSKSLNEV KHFLTHYCEE  540
RKAEGYIRQP DHVQSFLQGF YVAMEDEDEW EEVLSYPEEF IYEVLDIGDF GPPNANAMER  600
LLVDKASSSK GKGKMRGRPP KLHRFYLAEQ RERAAKMKLD AQRERAASMK LEDLRVYFHL  660
SIEEASEKLR LPVAIVKRLC RKFGVCRWPS RKQLKAISKE ISSLQHMLLS YRKGTRDYIA  720
ARIESLEKER AILLHYS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-09	RWP-RK domain-containing protein