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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
FANhyb_rscf00001550.1.g00001.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
| Family |
NF-YC |
| Protein Properties |
Length: 345aa MW: 38103.6 Da PI: 4.8737 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| FANhyb_rscf00001550.1.g00001.1 | genome | kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 56.7 | 5.5e-18 | 67 | 145 | 20 | 98 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++ +arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv r
FANhyb_rscf00001550.1.g00001.1 67 NFDMARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSVHLKHCVQSYNVFDFLREIVSR 145
6889***********************************************************************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MRILQGAMDE ELDIFEGERV HYWGSVVLKL AVILMLSTKS HQGCCTLIPP GQNIGLSMQP 60
LGSLFTNFDM ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY EITLQRGAKT 120
MNSVHLKHCV QSYNVFDFLR EIVSRVPDYG HGHSDAAASA DDRAITKRRK PPGDECIDSD 180
EELKRSKMLE VSHGSSSGRG RGRGRGRGRG RGARTTEREP VHHETESEPC TSLQQSSKPN 240
VNPAMVVDDV SESKDLLKEN VSVPDESDPT VRNFDLNADV HEKEDTKAAA AAAQASSAAP 300
TSETKHEEYP GWSLSDVDKM AIDPLQLAQL SKRLDEDEED YDEEG
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 200 | 210 | RGRGRGRGRGR |
| 2 | 202 | 211 | RGRGRGRGRG |
