PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001483.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 345aa    MW: 40004.9 Da    PI: 5.2267
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001483.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36211132103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+yei++d+++++++sws+ +nsfvv+d++ fa ++LpkyFkh+nf+SFvRQLn+YgFkkv++++         we
  FANhyb_rscf00001483.1.g00001.1  21 FLSKTYEIVDDSTTNHIVSWSKANNSFVVWDPQAFAISLLPKYFKHNNFSSFVRQLNTYGFKKVDTDR---------WE 90 
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F+h+ F +g+k+ll++i++++++
  FANhyb_rscf00001483.1.g00001.1  91 FAHEVFLRGQKHLLKNIRKRRNT 113
                                     *****************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-3914105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5617110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNPQSLPVPM ERLNEQCPPP FLSKTYEIVD DSTTNHIVSW SKANNSFVVW DPQAFAISLL  60
PKYFKHNNFS SFVRQLNTYG FKKVDTDRWE FAHEVFLRGQ KHLLKNIRKR RNTSHNVHYA  120
NSQQGLDSCI EVGSFGSLDG EIDQLRRDKE VLMGELVKLR QQQQTTRLHL HGMEDRLKRT  180
EMKQQQMMNF LARAMQNPNF VHQLAQKKDR KKQLEDAIRK KRRRPIEGPS SIEVGELGQG  240
GGEAFVKVEP QYYGDITELD VSGLDTFVVE MQGTDENQLV HDGQECMEKE EEHERRSKDL  300
SEVFWEEFLN DGVDEDVEVP GVQEEDEEDV NVLIEQLGCL VSKPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-26611014129Heat shock factor protein 1
5d5v_B8e-26611014129Heat shock factor protein 1
5d5v_D8e-26611014129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207220KDRKKQLEDAIRKK
2209223RKKQLEDAIRKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296577.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2P6QPK00.0A0A2P6QPK0_ROSCH; Putative transcription factor HSF-type-DNA-binding family
STRINGXP_004296577.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-104heat shock transcription factor A6B