PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001377.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 738aa MW: 86238.3 Da PI: 9.4291

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001377.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.2e-17	29	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrt 60 kfYn YA+ GFs+rksk+++ ++++ +++r++ Csk g + +++++ ++ rr +tr+ FANhyb_rscf00001377.1.g00001.1 29 KFYNYYAHVRGFSTRKSKMYRYRTSDFVYRREWECSKAGVNPKKRRNpvevaekkrpvdiketkrrNHMLRRGYRQTRC 107 6*****************************************999*********7665544445557789* PP FAR1 61 gCkaklkvkkek.dgkwevtkleleHnHela 90 C+ak++vk ++k+ v ++++ HnH+l+ FANhyb_rscf00001377.1.g00001.1 108 RCTAKFVVKWCLrRKKYFVCEFVTLHNHDLC 138 *******9988***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-15	29	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-30	260	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	539	577	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.4E-4	551	569	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0021	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
DKFNRLNIRD ITYDDVSDLL FEDYEAAGKF YNYYAHVRGF STRKSKMYRY RTSDFVYRRE 60 WECSKAGVNP KKRRNPVEVA EKKRPVDIKE TKRRNHMLRR GYRQTRCRCT AKFVVKWCLR 120 RKKYFVCEFV TLHNHDLCRP NEVHFLRSHR KVEDHDLAQV QSLNEVQVPI SRAYEFLSYQ 180 AGGYNNMRFT LKDLYNKLGR KNITDNAEGD AQTAVRSLRA RSARETEFFF EHTVDTEGRL 240 KNMFWRDHQS LLDYTAYGDV LIIDSTYKTN RYRQPLVLFV GCNNHRATTV FGFALVGDEK 300 EETYDWVFNM FLVSMKYKKP MSVITDGDEA IKSVLERLMP EARHRLCAWH IGRNIGQNLN 360 NVEAIKCFSK FIYASLTVPE WEAQWREAVE MHQMENNEWV TALYKKRTRW AESFFRGSFY 420 GGMCSTQRCE GMNCQFKKRL DPSTTVSAVY GRLEWKQRRI RDRAQLDNFK VRNSTPVFDT 480 HMRKLEVEAC KTFSHDIFIM IKSQINFGDR FVVHQRFPFP NADAIVFYVG QYDKVERRWS 540 VDYCGNKGNP QWSCSCKMYE SDGIPCAHLF CVFKYELIIE FPTCLINKRW TREVGETTIV 600 PSCVQVQNTS LAKSARYASL LIEAGKACSR YAESPERFNA AMIELEKLKK CSMKYNPTVN 660 EDHTALSESD SVVGDPLKCR TKGTPSKTEQ KRSVITCSNC EGLGHNTRSS KKPRLVPDVC 720 GSGNVVGRQT PALDNSRD

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

DKFNRLNIRD ITYDDVSDLL FEDYEAAGKF YNYYAHVRGF STRKSKMYRY RTSDFVYRRE  60
WECSKAGVNP KKRRNPVEVA EKKRPVDIKE TKRRNHMLRR GYRQTRCRCT AKFVVKWCLR  120
RKKYFVCEFV TLHNHDLCRP NEVHFLRSHR KVEDHDLAQV QSLNEVQVPI SRAYEFLSYQ  180
AGGYNNMRFT LKDLYNKLGR KNITDNAEGD AQTAVRSLRA RSARETEFFF EHTVDTEGRL  240
KNMFWRDHQS LLDYTAYGDV LIIDSTYKTN RYRQPLVLFV GCNNHRATTV FGFALVGDEK  300
EETYDWVFNM FLVSMKYKKP MSVITDGDEA IKSVLERLMP EARHRLCAWH IGRNIGQNLN  360
NVEAIKCFSK FIYASLTVPE WEAQWREAVE MHQMENNEWV TALYKKRTRW AESFFRGSFY  420
GGMCSTQRCE GMNCQFKKRL DPSTTVSAVY GRLEWKQRRI RDRAQLDNFK VRNSTPVFDT  480
HMRKLEVEAC KTFSHDIFIM IKSQINFGDR FVVHQRFPFP NADAIVFYVG QYDKVERRWS  540
VDYCGNKGNP QWSCSCKMYE SDGIPCAHLF CVFKYELIIE FPTCLINKRW TREVGETTIV  600
PSCVQVQNTS LAKSARYASL LIEAGKACSR YAESPERFNA AMIELEKLKK CSMKYNPTVN  660
EDHTALSESD SVVGDPLKCR TKGTPSKTEQ KRSVITCSNC EGLGHNTRSS KKPRLVPDVC  720
GSGNVVGRQT PALDNSRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_004308494.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-81	FAR1-related sequence 5