PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001319.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 199aa    MW: 22485.1 Da    PI: 8.2158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001319.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-0964104954
                                     HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                      r RR+ri ++f  L++l+P  +      K++ +++Le+A++Y+k L
  FANhyb_rscf00001319.1.g00001.1  64 ARERRHRISERFKILQSLVPGgN------KMDTVSMLEEAIQYVKFL 104
                                     699*****************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.47855104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-1560115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-1361109No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1261112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-764104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEYYFPAISD GSNFSSSSVI TNTNNMNING GGYKDKMKKG ASDHDQKVKS SKVKLSTDPQ  60
SVAARERRHR ISERFKILQS LVPGGNKMDT VSMLEEAIQY VKFLKNQIRL HQTMINFARD  120
DASHQYYDHD AATGNVFQLP IHHSHPVNRP QQQALCYEQN NFVGTSSSVQ PSVPVMPDYP  180
CFQGQEAAPE IDAYLKYYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468442.11e-127PREDICTED: transcription factor LAX PANICLE-like
TrEMBLA0A2P6R8X93e-90A0A2P6R8X9_ROSCH; Putative adenylylsulfatase transcription factor bHLH family
STRINGXP_008388859.17e-50(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.15e-29APRATAXIN-like