PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 117aa MW: 13055.2 Da PI: 11.0564

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001300.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.4e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstg+lye++s FANhyb_rscf00001300.1.g00004.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGRLYEFAS 59 8***********************************************86 PP
2	SRF-TF	87.9	5.7e-28	61	110	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstg+lye++s FANhyb_rscf00001300.1.g00004.1 61 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGRLYEFAS 110 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.525	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-27	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.57E-36	2	64	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-28	38	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-24	61	112	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.464	61	112	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-28	61	111	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-25	61	108	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGRLYEFAST 60 RIDNSTSRQV TFSKRRNGLL KKAKELAILC DAEVGVMIFS STGRLYEFAS TSLAFHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-19	1	113	1	63	MEF2C
5f28_B	2e-19	1	113	1	63	MEF2C
5f28_C	2e-19	1	113	1	63	MEF2C
5f28_D	2e-19	1	113	1	63	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021659609.1	1e-35	MADS-box transcription factor ANR1-like isoform X3
Swissprot	Q6EP49	1e-33	MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBL	A0A4D6NG50	5e-46	A0A4D6NG50_VIGUN; MADS-box transcription factor
STRING	XP_010091612.1	3e-39	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-34	AGAMOUS-like 16

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]