PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001235.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 228aa    MW: 25880.3 Da    PI: 7.198
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001235.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.22.1e-131698186
                        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessst 78
                                    +W+++ + +Li+a  ++  rl+rg+l++++W ev++++   r++ + ++  qCk++++ l+k++k +k  +        s+
  FANhyb_rscf00001235.1.g00005.1 16 CWSDDATSVLITAWGDRYLRLNRGNLRQKDWTEVADAVnslRDGAVYKTDGQCKNRIDTLKKKFKLEKSKSFP------SS 90
                                    7*************************************999999*********************99876654......35 PP

                        trihelix 79 cpyfdqle 86
                                    + ++d l+
  FANhyb_rscf00001235.1.g00005.1 91 WIFYDTLD 98
                                    77777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-2414100No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MERPTRPYAP GGREDCWSDD ATSVLITAWG DRYLRLNRGN LRQKDWTEVA DAVNSLRDGA  60
VYKTDGQCKN RIDTLKKKFK LEKSKSFPSS WIFYDTLDSL IGVPSSSNAA VLNRPTKQPL  120
TLALTLRAAD PPSPESDDDV EEEEEGGVGL GGGAACRELA RAILKFGEIY ERMERSKQDQ  180
EVELEKQRMA FTKELEVERL NMFMDAQLEL EKMRKKRPKY SHSSGKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308948.21e-142PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG87e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P6SLD51e-115A0A2P6SLD5_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004308948.11e-139(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.17e-54sequence-specific DNA binding transcription factors