PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001235.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 178aa MW: 19210.7 Da PI: 7.8534

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001235.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.7	4.5e-39	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +CaaCk+l+r+C++ C++ap+f +++p kfa vhk+FGasnv+k+l+++pee+red++ssl+yeAear+rdPvyG++g FANhyb_rscf00001235.1.g00004.1 12 SCAACKLLKRRCVPTCIFAPHFRSDEPLKFAKVHKVFGASNVSKILSEVPEEQREDTVSSLAYEAEARLRDPVYGCIGA 90 6**************************************************************************** PP DUF260 80 ilklqqqleqlkaelallkee 100 i lq ++ +l+++la ++++ FANhyb_rscf00001235.1.g00004.1 91 IAMLQGKMVELQHDLAIARAR 111 *************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.783	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-39	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKGTHAPRSS SSCAACKLLK RRCVPTCIFA PHFRSDEPLK FAKVHKVFGA SNVSKILSEV 60 PEEQREDTVS SLAYEAEARL RDPVYGCIGA IAMLQGKMVE LQHDLAIARA RLSSYGHPTS 120 SVSSSASSYA MLEDHLGEAN FAGFPACSGF SNGLNQSSTE FISQHGTTSG FSYPPYIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	7	115	6	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	7	115	6	114	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307677.1	1e-118	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2P6SLD7	1e-107	A0A2P6SLD7_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004307677.1	1e-118	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-63	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]