PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001076.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 536aa    MW: 60298.5 Da    PI: 4.5177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001076.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.26.1e-3178451128
                             NAM  51 vkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +k+++++w+fFs+rd+ky++ g r+nrat++gyWkatgkd+++++  ++ vglkktLvfykgrap+ge+tdWvmhey+l
  FANhyb_rscf00001076.1.g00002.1   7 LKTGDRQWFFFSPRDRKYPNgGGRSNRATRHGYWKATGKDRNITC-YNRSVGLKKTLVFYKGRAPTGERTDWVMHEYTL 84 
                                     467899*************9678**********************.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.7551107IPR003441NAC domain
SuperFamilySSF1019415.23E-347107IPR003441NAC domain
PfamPF023655.7E-151384IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MECLSLLKTG DRQWFFFSPR DRKYPNGGGR SNRATRHGYW KATGKDRNIT CYNRSVGLKK  60
TLVFYKGRAP TGERTDWVMH EYTLDEEELK RCQNVQEYYA LYKVFKKSGP GPKNGEQYGA  120
PFREEDWADD ECPIINSSAD REISVEQIGE VVANYNAKPF GEVPLKQVEQ ITANGYANNN  180
SEAHSTIDDL EEFMKQIADD AVLDLPQIDD LVHSLSQVVS EEETQSTVVD LYSSEVKCPQ  240
SHTTFDPSGQ QGNEYASFDF TQSATSQTQL YEASEASASD VHKLESFTPI LREEDFLEMD  300
DLLGPEPTIS NTGNSGGNLQ FNELDGFDLF QDAAMFFNEM GPMDQGNVSH QFMNSMGSNV  360
VNQFDYQIQP APLQINHQLN QESTQINNQL WVQNERRDFY ASTETTKGSG PPFTSGVVHE  420
SSNHRPQENP NQNGNEAAGV TSQFSSALWS FVESIPTTPA SASENALVSR AFERMSSFSR  480
MRIIARSTNV PAGKDSETMR ESWKRGFFFL PVLVALCAIF WVLMASLRQW GRCISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-271011372174NAC domain-containing protein 19
3swm_B1e-271011372174NAC domain-containing protein 19
3swm_C1e-271011372174NAC domain-containing protein 19
3swm_D1e-271011372174NAC domain-containing protein 19
3swp_A1e-271011372174NAC domain-containing protein 19
3swp_B1e-271011372174NAC domain-containing protein 19
3swp_C1e-271011372174NAC domain-containing protein 19
3swp_D1e-271011372174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290458.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A2P6PRH10.0A0A2P6PRH1_ROSCH; Putative transcription factor NAM family
STRINGXP_004290458.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-112NAC domain containing protein 17