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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001050.1.g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 419aa MW: 46375 Da PI: 4.292 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 47 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g FANhyb_rscf00001050.1.g00003.1 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.42E-31 | 46 | 103 | No hit | No description |
PROSITE profile | PS51032 | 19.559 | 47 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-35 | 47 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-19 | 47 | 104 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-13 | 47 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 47 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MARKRKVSEG VEETKSCSEG TMAWDEMVKE ASAAAALGGA ARRARKRFVG VRQRPSGRWV 60 AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSPSP SSTPALPSKI 120 TNLLLQRLKA RNNNTYCTAP SAAPLPVNHQ QKQYQEEAVA EFSENQYTDF LNDPEDYITS 180 NNENIPEISA SSIDYMTSSF ESCLTEKEEY STAREADQQM DYGNLSEVAG TTYSGVDANF 240 VCAGSEEDVE EEEVNGQLGA IDFQFVDDIG STDYYSPSPF EIAEEIEEAV EPETYADEPS 300 MLTAAMKRMK YERKFSASLY AFNGIRECLK LKIESSTTGN TRMRGISDLQ RACSNKNKEE 360 AAPKQEYEGK KEEENQPTDM GSSSSSSSFS SMSSAVNGDG ELSLWNSLDL QPICFLSTN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306123.1 | 0.0 | PREDICTED: uncharacterized protein LOC101315370 | ||||
TrEMBL | A0A3S8T932 | 0.0 | A0A3S8T932_FRAAN; Transcription factor ERF42 | ||||
STRING | XP_004306123.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-16 | related to AP2 11 |