PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001029.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 478aa    MW: 52111.7 Da    PI: 9.4464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001029.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33196252360
                                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  FANhyb_rscf00001029.1.g00002.1 196 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 252
                                     9***************************************.***************85 PP
2WRKY103.11.5e-32396452359
                                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver +edpk++++tYeg+Hnh+
  FANhyb_rscf00001029.1.g00002.1 396 DGFRWRKYGQKVVKGNPYPRSYYRCTSVKCSVRKHVERVSEDPKAFITTYEGKHNHD 452
                                     9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-30188253IPR003657WRKY domain
SuperFamilySSF1182904.84E-26193253IPR003657WRKY domain
SMARTSM007743.8E-37194252IPR003657WRKY domain
PfamPF031061.5E-25196250IPR003657WRKY domain
PROSITE profilePS5081123.686196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-34379454IPR003657WRKY domain
PROSITE profilePS5081135.094389454IPR003657WRKY domain
SuperFamilySSF1182902.48E-28389454IPR003657WRKY domain
SMARTSM007741.2E-36394453IPR003657WRKY domain
PfamPF031061.4E-25396452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDIKEAERVV IAKPVATRPT CSSFKSFTEL LTGAIDAAPS NVSSETAVPA IRPKTVRFKP  60
TANHPVAALV SSQAETSGAA ISNSAEKVSK SDSKSTVVYK PLAKVVSRAT VSALANLGNF  120
NTSQQQTQSS VGTGVVLRPN RDKSYKTQLV SNIYQKSRSC AETSQTTEPV KIVSQNMEED  180
AKNIPAAANS DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSLDGQIA  240
EIVYKGEHNH SKPQPPKRSS SGTQGSGFAS DATGQDNNTR LWNSHLNERN EGSEGRVEDQ  300
NEVGIPVHSY QSKNIVHYDP LATGTLNAGT ATPDNSCGVS GECEEGSKGV ETEDYEPRSK  360
RRKSVNQSSE AGISGEVMQE PRVVVQSSAD TEITGDGFRW RKYGQKVVKG NPYPRSYYRC  420
TSVKCSVRKH VERVSEDPKA FITTYEGKHN HDMPLRTANP GASSEKDPQA PPSSKEKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32196454877Probable WRKY transcription factor 4
2lex_A3e-32196454877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302832.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_011466633.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_011466634.10.0PREDICTED: WRKY transcription factor 44
TrEMBLA0A2P6RAH10.0A0A2P6RAH1_ROSCH; Putative transcription factor WRKY family
STRINGXP_004302832.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-110WRKY family protein