PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000987.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 1376aa    MW: 155169 Da    PI: 7.439
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000987.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1492e-1566161191
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.d 73 
                                     kfY+ Y+  +GF++r+ + +k   +g+i +r +vCskeg++++ +kk     + k+r +r++ r +C a + vk ++  
  FANhyb_rscf00000987.1.g00003.1  66 KFYEIYSAALGFRIRRFRCEKD-LSGTIRRRGWVCSKEGEKRPARKKevraaSCKTRPPRSSMREKCMAAFGVKYSEeL 143
                                     6*****************9998.8888***************9999988887778888*****************9988 PP

                            FAR1  74 gkwevtkleleHnHelap 91 
                                     + ++v+ + ++H+Hel p
  FANhyb_rscf00000987.1.g00003.1 144 AAYYVKYFTTQHSHELLP 161
                                     9**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1266161IPR004330FAR1 DNA binding domain
PfamPF105515.9E-27367461IPR018289MULE transposase domain
PROSITE profilePS5096610.076646684IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014659686IPR006564Zinc finger, PMZ-type
PROSITE profilePS513759.153835869IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-4842867IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.2E-6842866IPR011990Tetratricopeptide-like helical domain
PfamPF015358.9E-4842866IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015868903IPR002885Pentatricopeptide repeat
PfamPF015350.0029868894IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.009870901IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.84902936IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.412937967IPR002885Pentatricopeptide repeat
PfamPF015350.22942966IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.2E-69661112IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.0719681002IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.6E-69701003IPR002885Pentatricopeptide repeat
PfamPF015351.1E-49701000IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.48110031037IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.33610381068IPR002885Pentatricopeptide repeat
PfamPF130414.7E-1310681116IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.25510691103IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.7E-610711104IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.82611041139IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.33311401170IPR002885Pentatricopeptide repeat
PfamPF015350.01511431168IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.2E-611801227IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.07912061240IPR002885Pentatricopeptide repeat
PfamPF144324.1E-4112421365IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1376 aa     Download sequence    Send to blast
MSNNENFVDV ESGEEDYCNM ETGDFETTRE TYGADGPFEY NGKSFRELTL KDFDGTYFDT  60
VEDAEKFYEI YSAALGFRIR RFRCEKDLSG TIRRRGWVCS KEGEKRPARK KEVRAASCKT  120
RPPRSSMREK CMAAFGVKYS EELAAYYVKY FTTQHSHELL PESNKAKSLI SHCVGKKLDL  180
AQAIAMPKAN DRIQTSAAHD NHPSGGNDCG GSTTELDLAR AVGLRKDRES IQTSDAYAYH  240
PSGGNEFVDL TTVSDLEQGV ARRKGSVNSA AASQHMVEPA GGHAFVSLTN RSDLTQTAAM  300
HKDSITNSSA YEYIVHPAGG YEFVDLMRRE LYDRMDIERR EALIEWLGNL FWRDSCSSLD  360
YARFGDVLNF DCTFKTNIYQ RPLAVFVGVN NHRGTVLFGS AILVDDTIDT YKWVLRTFLG  420
AMKDKKPISV LTDGDDKIQN AVAELFPKAR QRLCSWHIEK NLATIIKDPD VEKAFTQFLY  480
NAIPPDEWEL GWKSMVETYG LQDNSWINMM YHRRKRWAET FFKGHFFGGM SSMQRCQGIH  540
RNLENAVGKY DRFCEYIPRM DKTLRKMRNI VCVDDFKCEN SKPDIITHMR SLEQQIADIF  600
THDIYLLIMH QIDWERKYII TKSEPYAGRD GKVFHLTQYD LPHRHWTVNY HHNISKVWFL  660
CSCKLFQSDG IPCAHIFSVM KAELILKLPE SLVLKRWTLD VGKPVNFHNL SDRNSQMVRY  720
ASLVSEIKSV CFPASITEEG TKKMKGEIAK LARDGTESQT HSGLQNLIRR HQLHVGSDAH  780
SFTGISVGIN AGHYTHSLPP ERSLSALISA ISSCPSVSYC RAIHACVIKS YSYSDGFIGD  840
QLVSCYAKMG SAEDALNLFD EMPKRDLVSW NSLISGFLRR GYVGKCLNAL FRMRFVVGIE  900
PNEVTLISVV SACASRGAVD EGMHIHGLAL KLGLLWEPKL VNSLINLYGK LGYLDAVCRL  960
VETMPMQNVV SWNLMIAIYA QNGSAAEGLN CFHLMRRAGV YPDDGTVVSL LQVCENLGLG  1020
KLAEGVHGVI IKSGLSANVR VATGVLDLYA KLGRLDYSLE VFKEFINPDK VAWTAMLAGY  1080
ATHGYGQEAV EIFENMVRKG VQPDHVTFTH LLSACSHSGL IKEGRNYFNI MSEVYGVEPR  1140
LDHYSCMVDL LGRSGLLNDA YELMKQMPME PNSGIWGAIF GACRMYGNIE LGKEVAERLF  1200
ALEPSDSRNY IMLSNMYSAA GLWRDASQVR AVMKEKGLAR IPGCSFIEYR NKIHRFVVGD  1260
QSHPESVRIY AKLEEVIGKI RKAGFVSQTE FILHDVEEAV KEDMISEHSE KLAIAFGLLV  1320
INAGMPIIIT KNLRICGDCH GAAKFISLIE KRTIIIRDSK RFHHFTNGVC TCGDYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D6e-5479912362332PLS9-PPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458214.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_011458215.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A2P6PKQ70.0A0A2P6PKQ7_ROSCH; Putative transcription factor FAR family
STRINGXP_004292394.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1167522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-56FAR1-related sequence 5