PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000932.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GeBP

Protein Properties

Length: 423aa MW: 45642.6 Da PI: 4.5878

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000932.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	116.3	1.8e-36	123	226	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.......spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkka 72 lfqrlw++eDei lLqG++d+++++g +++ d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k+ FANhyb_rscf00000932.1.g00004.1 123 LFQRLWTDEDEIELLQGFLDYTTQRGNkggggggGSHQnDTALFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNVLNKI 201 79*********************99888898845555************************************ PP DUF573 73 ksgkepsfskehdqkifelskkiWg 97 ++gke+sf+++hdq +fe+s+kiW FANhyb_rscf00000932.1.g00004.1 202 ANGKEVSFKSPHDQATFEISRKIWS 226 **********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-33	124	226	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MTPEQDDAVL PEAGGDLSSS SQDDEEEDDV VDEDDDYDVD DDDVINSASP SSTSNSALPV 60 AIATATAAAH PVVTVALPAP PLKSALAVVV PDPKRPRTIQ YDPVLLPAPE EKKPVAVVDE 120 RRLFQRLWTD EDEIELLQGF LDYTTQRGNK GGGGGGGSHQ NDTALFYDQI KSKLQLEFNK 180 NQLVEKLRRL KKKYRNVLNK IANGKEVSFK SPHDQATFEI SRKIWSNIGG VGAGGADDNA 240 LDDEDPNPNP NNPNFNHFEV KTEDAPAGFQ KSTPRSRKRQ RPPAQPKTPS LAEPAAVPVI 300 KENHHNVNNG GVGVGGGSNC GNCNVQGMIE ETVKSCMSPL FRELMSNSMG GGQTRGFGGL 360 SLNPIPLSFG GPSINLNFGG GEAADEQWRK QQILELEVYS KRLELVQNQI KVALDELRST 420 GGG

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MTPEQDDAVL PEAGGDLSSS SQDDEEEDDV VDEDDDYDVD DDDVINSASP SSTSNSALPV  60
AIATATAAAH PVVTVALPAP PLKSALAVVV PDPKRPRTIQ YDPVLLPAPE EKKPVAVVDE  120
RRLFQRLWTD EDEIELLQGF LDYTTQRGNK GGGGGGGSHQ NDTALFYDQI KSKLQLEFNK  180
NQLVEKLRRL KKKYRNVLNK IANGKEVSFK SPHDQATFEI SRKIWSNIGG VGAGGADDNA  240
LDDEDPNPNP NNPNFNHFEV KTEDAPAGFQ KSTPRSRKRQ RPPAQPKTPS LAEPAAVPVI  300
KENHHNVNNG GVGVGGGSNC GNCNVQGMIE ETVKSCMSPL FRELMSNSMG GGQTRGFGGL  360
SLNPIPLSFG GPSINLNFGG GEAADEQWRK QQILELEVYS KRLELVQNQI KVALDELRST  420
GGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465920.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A2P6R683	1e-170	A0A2P6R683_ROSCH; Putative transcription factor GeBP family
STRING	XP_004304723.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-74	DNA-binding storekeeper protein-related transcriptional regulator