PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000931.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 470aa    MW: 52872.6 Da    PI: 7.8076
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000931.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.41.9e-161432241198
                                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                      +++ + lp  f+++h  +  +++t+tlede gr+ + k+i +k++    l++GW++F+ +++L egD++vF+l++  +
  FANhyb_rscf00000931.1.g00001.1 143 DEHDKMGLPSLFCKSHLPD--KDITMTLEDEGGRQLQSKYIACKTG----LSAGWRQFAASHKLLEGDVLVFQLVEPAK 215
                                     578899**********644..678****************777776....************************99899 PP

                                     E..EEEEE- CS
                              B3  90 felvvkvfr 98 
                                     f+ + ++++
  FANhyb_rscf00000931.1.g00001.1 216 FKITCGIVS 224
                                     988888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-16113219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-17115219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-20119219No hitNo description
PROSITE profilePS5086310.616133236IPR003340B3 DNA binding domain
SMARTSM010196.6E-12139226IPR003340B3 DNA binding domain
PfamPF023621.1E-13144224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGPNIRKGTP QRAEKKENKP KTPPSKSKPK PIKRVATPPG NQKKTNKLNE KEVEHSLPMK  60
ELSNTQMLEQ AALGHSGKST PSSTQYDIPI EGSPSRGQAK SSAIIRAQEV RSKLDPTFPS  120
FVKSLLRSHV ASCFWMVYFL QLDEHDKMGL PSLFCKSHLP DKDITMTLED EGGRQLQSKY  180
IACKTGLSAG WRQFAASHKL LEGDVLVFQL VEPAKFKITC GIVSSSMLQV YVIRSNDFTE  240
VDGALRLLNL DAQTKHNDAG MFLNSCVCFF IVSCILEDKD DAETGAVACN ESNRKRTKFP  300
PEVVQKKKKI DLPVEYSEID SEETDSEVEN SRLPGMTLQF EDIKSYENFK ILVNGLLVDS  360
EFPDNIRRKY YKLCCSQNAF LHENVMKGTD YKLIVGAIVE TVHIVDAIKA CQITTNQGDF  420
VCWDRYLRAF ELLGMNVGFI RVRLCRLANL AFDSEDAMDA KTYKEAREES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293308RKRTKFPPEVVQKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464164.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2P6RNI70.0A0A2P6RNI7_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004289224.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-30B3 family protein