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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000910.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 545aa MW: 60264.3 Da PI: 7.0095 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.5 | 1.9e-10 | 240 | 281 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L FANhyb_rscf00000910.1.g00002.1 240 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 281 6889*************************9777777666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.2E-7 | 237 | 314 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.186 | 239 | 283 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.8E-8 | 240 | 282 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 6.42E-21 | 241 | 287 | No hit | No description |
SuperFamily | SSF57959 | 1.13E-6 | 241 | 283 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.3E-8 | 242 | 284 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 244 | 259 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.3E-30 | 322 | 397 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MAFISATCPD SSFFLEYKDE NGLLRKSCMA ASHRVVGDTG LSDSGPSSSN HHVPYATVLH 60 GINAPSTSFL NQEGSTFDFG ELEEAIARQV RNDEAQAPLF TGRPAATLEM FPSWPMRYHQ 120 TPRGSSKSAG GDSTDSGSQV NTTTLTSKGD QTQLEPESPI SKIASSSNHH HHQHQALDQN 180 HLQFQQQQQL QQDMAISDTS RATTVATGAA EPSKGQSAPK PNHEKRKGAG STSENKQLDA 240 KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLTQLEQD LQRARAQGLL MGGCGGGFGN 300 ISSAAAIFDM EYARWLEDDH RHMSELRTGL QAHLSDNDLR IVVDGYISHY DEIFQLKGVA 360 AKSDVFHLIT GLWASQAERC FLWMGGFRPS DLIKMLTQQL DPITEQQVMG ICSLQHSSQQ 420 AEEALTQGLD QLHQSLIDTI AGGPVVDGMQ QMAVALGKLT NLEGFVRQAD NLRQQTLHQL 480 RRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRESMMS DDNSCQTTTD LQMVHQPSQN 540 HFSSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291604.1 | 0.0 | PREDICTED: transcription factor TGA6 isoform X4 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A2P6QDK2 | 0.0 | A0A2P6QDK2_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004291604.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4555 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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