PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000879.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 425aa    MW: 46373.6 Da    PI: 7.1902
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000879.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-172170255
                             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                     ++GVr++  +g+WvAeIr+p+    r +r +lg+f t  eAa a++ a++kl+g
  FANhyb_rscf00000879.1.g00001.1 21 TFRGVRQRT-WGKWVAEIREPK----RgARLWLGTFNTSTEAALAYDDAARKLYG 70
                                    69****999.**********83....46************************987 PP
2AP253.84.7e-17266315255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                      ++GVr++  +g+WvAeIr+p+    r +r +lg+f t  eAa a++ a++kl+g
  FANhyb_rscf00000879.1.g00001.1 266 TFRGVRQRT-WGKWVAEIREPK----RgARLWLGTFNTSTEAALAYDDAARKLYG 315
                                     69****999.**********83....46************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.03E-292080No hitNo description
SuperFamilySSF541714.84E-202179IPR016177DNA-binding domain
PROSITE profilePS5103221.5092178IPR001471AP2/ERF domain
SMARTSM003803.5E-362184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-292179IPR001471AP2/ERF domain
PRINTSPR003676.3E-92233IPR001471AP2/ERF domain
PfamPF008478.8E-122270IPR001471AP2/ERF domain
PRINTSPR003676.3E-94460IPR001471AP2/ERF domain
CDDcd000182.08E-26265320No hitNo description
PROSITE profilePS5103220.455266323IPR001471AP2/ERF domain
SMARTSM003804.8E-32266329IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18266321IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-27266323IPR001471AP2/ERF domain
PfamPF008478.8E-12267315IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGRSRKGCMK GKGGPENATC TFRGVRQRTW GKWVAEIREP KRGARLWLGT FNTSTEAALA  60
YDDAARKLYG SSAKLNLPDQ SSSSASTSSK TSSGSSSNDK GGGGEHNNIK QEAYNSCDDV  120
HRGWNSDNNN GEISDYCLWE SNPVLSADWS GVCGEREFLE MNDIGVMMGG NEFSLKRLAS  180
KFMVAIGIPI WGLWEMSVSC TVGCRSNLAM PCEGFVAEEK LELSSISYKS IHQLIYTLFS  240
EVYITMGRSR KGCMKGKGGP ENATCTFRGV RQRTWGKWVA EIREPKRGAR LWLGTFNTST  300
EAALAYDDAA RKLYGSSAKL KLSDQSSSSA STSSKTSSGS SSNDKGGGGE HNNIKQEAYN  360
SCDDVYRGWN SGNNNGEISD YCLWESNPVL SSDWSGVCGE REFLEMNDIG VMMGGNEFVS  420
CNMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1822322360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302113.11e-109PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLA0A3S8T9121e-101A0A3S8T912_FRAAN; Transcription factor ERF30
STRINGXP_004302113.11e-108(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-42ERF family protein