PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000878.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 546aa MW: 61060.8 Da PI: 6.6039 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.8 | 1.4e-25 | 4 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyL..kkkvegkk..leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatg 71 +p+GfrFhPtdeel+ +yL k+kv + + e++ v++evd+y ++ePw++ + ++ +++++fF+k +k +++g FANhyb_rscf00000878.1.g00001.1 4 VPVGFRFHPTDEELIRHYLylKNKVIKGPaeEEAAAVVPEVDLYgETEPWRIWEahgGADLYDQDLFFFTKLKKVNPHG 82 599*************986225666666644344456*****99568*****74233333366799************* PP NAM 72 krknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +r nr++ +g+W++ ++++++ +++ +g k+ + + + +++ ++ W m+ey+l FANhyb_rscf00000878.1.g00001.1 83 TRINRKIGTGTWSEGEPSRPIFVGekkNKTPIGRKRKFRYEN--KSSDHHGCWYMEEYSL 140 **********************975445555********984..4444699*******98 PP | |||||||
2 | NAM | 28 | 6.2e-09 | 186 | 215 | 2 | 28 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...l 28 p+GfrFhPtd+el++++L +k +gk l FANhyb_rscf00000878.1.g00001.1 186 PVGFRFHPTDQELICYFLYNKNKGKGgrgL 215 89********************99984331 PP | |||||||
3 | NAM | 38.5 | 3.4e-12 | 322 | 431 | 22 | 128 |
NAM 22 kvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk 95 +ve k e +++e+d++ ++ePw++ + ++ +++++fF++ +k +++g+r r + + g+W++ +k++++ FANhyb_rscf00000878.1.g00001.1 322 EVEVGKKEN-MFLHEFDLFgSTEPWEIWEmfrGAELCNQDLFFFTQLKKVNPKGSRIGRkVGSGGTWSEGDVSKPIVDD 399 333333333.469999987367*****75233333355689******************5556899***********98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ +g k+ L + k +p+ ++ W ++ey+l FANhyb_rscf00000878.1.g00001.1 400 rTGNPIGRKRKLRYEKVGSPH--HACWYLDEYSL 431 68889*********9877777..8********87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-27 | 2 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.157 | 4 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-16 | 5 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-7 | 184 | 210 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-12 | 186 | 431 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.498 | 301 | 447 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-14 | 332 | 446 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 546 aa Download sequence Send to blast |
MANVPVGFRF HPTDEELIRH YLYLKNKVIK GPAEEEAAAV VPEVDLYGET EPWRIWEAHG 60 GADLYDQDLF FFTKLKKVNP HGTRINRKIG TGTWSEGEPS RPIFVGEKKN KTPIGRKRKF 120 RYENKSSDHH GCWYMEEYSL DGIKSADYVI CRLRENNRSG GGGTGGNRDS LAISVAASME 180 ASGPIPVGFR FHPTDQELIC YFLYNKNKGK GGRGLAMFMA EEAEAEEEKI KALPAAEGQA 240 ELPEDKNNTN EKEGQAPPPE VEEKKNNGEN EAAAVVPVEE EEKKKKEKGK EKKTEGEMQA 300 APLLLLEYMK DNKEDETLLP REVEVGKKEN MFLHEFDLFG STEPWEIWEM FRGAELCNQD 360 LFFFTQLKKV NPKGSRIGRK VGSGGTWSEG DVSKPIVDDR TGNPIGRKRK LRYEKVGSPH 420 HACWYLDEYS LLDADIGDYV ICRLRKNDKL AAAAFSSAEA VNNRKRKATP STTPATAEES 480 KQPPATAEES KQPPASSKAK RRRITGLTQV EKAAADVLMN MANSTFNHNT LKLFGIEIGS 540 TPIGGE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-13 | 3 | 153 | 14 | 165 | Stress-induced transcription factor NAC1 |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 499 | 503 | KRRRI |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466904.1 | 0.0 | PREDICTED: uncharacterized protein LOC105352211 | ||||
TrEMBL | A0A2P6RTY0 | 0.0 | A0A2P6RTY0_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004309935.1 | 1e-45 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34264 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24590.2 | 5e-15 | TCV-interacting protein |