PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000878.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 546aa MW: 61060.8 Da PI: 6.6039

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000878.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.8	1.4e-25	4	140	1	128
NAM 1 lppGfrFhPtdeelvveyL..kkkvegkk..leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatg 71 +p+GfrFhPtdeel+ +yL k+kv + + e++ v++evd+y ++ePw++ + ++ +++++fF+k +k +++g FANhyb_rscf00000878.1.g00001.1 4 VPVGFRFHPTDEELIRHYLylKNKVIKGPaeEEAAAVVPEVDLYgETEPWRIWEahgGADLYDQDLFFFTKLKKVNPHG 82 599***********986225666666644344456*99568*74233333366799********* PP NAM 72 krknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +r nr++ +g+W++ ++++++ +++ +g k+ + + + +++ ++ W m+ey+l FANhyb_rscf00000878.1.g00001.1 83 TRINRKIGTGTWSEGEPSRPIFVGekkNKTPIGRKRKFRYEN--KSSDHHGCWYMEEYSL 140 ******************975445555****984..4444699*****98 PP
2	NAM	28	6.2e-09	186	215	2	28
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...l 28 p+GfrFhPtd+el++++L +k +gk l FANhyb_rscf00000878.1.g00001.1 186 PVGFRFHPTDQELICYFLYNKNKGKGgrgL 215 89********************99984331 PP
3	NAM	38.5	3.4e-12	322	431	22	128
NAM 22 kvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk 95 +ve k e +++e+d++ ++ePw++ + ++ +++++fF++ +k +++g+r r + + g+W++ +k++++ FANhyb_rscf00000878.1.g00001.1 322 EVEVGKKEN-MFLHEFDLFgSTEPWEIWEmfrGAELCNQDLFFFTQLKKVNPKGSRIGRkVGSGGTWSEGDVSKPIVDD 399 333333333.469999987367***75233333355689**************5556899*******98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ +g k+ L + k +p+ ++ W ++ey+l FANhyb_rscf00000878.1.g00001.1 400 rTGNPIGRKRKLRYEKVGSPH--HACWYLDEYSL 431 68889*****9877777..8******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-27	2	154	IPR003441	NAC domain
PROSITE profile	PS51005	29.157	4	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-16	5	140	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-7	184	210	IPR003441	NAC domain
Pfam	PF02365	6.2E-12	186	431	IPR003441	NAC domain
PROSITE profile	PS51005	18.498	301	447	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-14	332	446	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MANVPVGFRF HPTDEELIRH YLYLKNKVIK GPAEEEAAAV VPEVDLYGET EPWRIWEAHG 60 GADLYDQDLF FFTKLKKVNP HGTRINRKIG TGTWSEGEPS RPIFVGEKKN KTPIGRKRKF 120 RYENKSSDHH GCWYMEEYSL DGIKSADYVI CRLRENNRSG GGGTGGNRDS LAISVAASME 180 ASGPIPVGFR FHPTDQELIC YFLYNKNKGK GGRGLAMFMA EEAEAEEEKI KALPAAEGQA 240 ELPEDKNNTN EKEGQAPPPE VEEKKNNGEN EAAAVVPVEE EEKKKKEKGK EKKTEGEMQA 300 APLLLLEYMK DNKEDETLLP REVEVGKKEN MFLHEFDLFG STEPWEIWEM FRGAELCNQD 360 LFFFTQLKKV NPKGSRIGRK VGSGGTWSEG DVSKPIVDDR TGNPIGRKRK LRYEKVGSPH 420 HACWYLDEYS LLDADIGDYV ICRLRKNDKL AAAAFSSAEA VNNRKRKATP STTPATAEES 480 KQPPATAEES KQPPASSKAK RRRITGLTQV EKAAADVLMN MANSTFNHNT LKLFGIEIGS 540 TPIGGE

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MANVPVGFRF HPTDEELIRH YLYLKNKVIK GPAEEEAAAV VPEVDLYGET EPWRIWEAHG  60
GADLYDQDLF FFTKLKKVNP HGTRINRKIG TGTWSEGEPS RPIFVGEKKN KTPIGRKRKF  120
RYENKSSDHH GCWYMEEYSL DGIKSADYVI CRLRENNRSG GGGTGGNRDS LAISVAASME  180
ASGPIPVGFR FHPTDQELIC YFLYNKNKGK GGRGLAMFMA EEAEAEEEKI KALPAAEGQA  240
ELPEDKNNTN EKEGQAPPPE VEEKKNNGEN EAAAVVPVEE EEKKKKEKGK EKKTEGEMQA  300
APLLLLEYMK DNKEDETLLP REVEVGKKEN MFLHEFDLFG STEPWEIWEM FRGAELCNQD  360
LFFFTQLKKV NPKGSRIGRK VGSGGTWSEG DVSKPIVDDR TGNPIGRKRK LRYEKVGSPH  420
HACWYLDEYS LLDADIGDYV ICRLRKNDKL AAAAFSSAEA VNNRKRKATP STTPATAEES  480
KQPPATAEES KQPPASSKAK RRRITGLTQV EKAAADVLMN MANSTFNHNT LKLFGIEIGS  540
TPIGGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-13	3	153	14	165	Stress-induced transcription factor NAC1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	499	503	KRRRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466904.1	0.0	PREDICTED: uncharacterized protein LOC105352211
TrEMBL	A0A2P6RTY0	0.0	A0A2P6RTY0_ROSCH; Putative transcription factor NAM family
STRING	XP_004309935.1	1e-45	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34264	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	5e-15	TCV-interacting protein