PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000844.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 295aa MW: 32826.1 Da PI: 4.9381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000844.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.9e-05	178	200	9	31
HHHHHHHHHHHHHHHHCTSCCC. CS HLH 9 ErrRRdriNsafeeLrellPkas 31 +r RR ri +++ eL +llP+++ FANhyb_rscf00000844.1.g00004.1 178 DRARRIRIAERLTELEKLLPHSV 200 799******************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.508	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-7	175	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-6	176	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MERESSHNNP LQLMSLNFGA SNTPQDDQNQ KMIMGTGSSE NQNDPFAVPW MVQSSMPAQN 60 CVDFLAESSA YLPKSPYEDM LERISLSVNG IHAADGGVSE FQRDLLYGSS LGKASGSKSI 120 DFSMDMDPWK HHASWTDTIT GASFDDVSQV DQKLTLAAPG FPSRPRQSAK GQKTLVTDRA 180 RRIRIAERLT ELEKLLPHSV EGGQEFVLDD VIDHIKFLQL QIKDLSRSRL GGEAVAEPMI 240 FREGYGHYFL HQQMLSEPLE EMIGKLLETN PVAADQLLRD KGLSLVPLGW TTKLF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290671.1	0.0	PREDICTED: transcription factor bHLH69
TrEMBL	A0A2P6PW64	1e-166	A0A2P6PW64_ROSCH; Putative transcription factor bHLH family
STRING	XP_004290671.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	7e-21	LJRHL1-like 2