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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000839.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 914aa MW: 103245 Da PI: 6.4126 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47 | 8.4e-15 | 63 | 137 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 Y+eYA+++GF+ ++ +s++s+ +g++t r+fvC keg ++++ ++ C+a+l+++ + ++w+ tk FANhyb_rscf00000839.1.g00001.1 63 LYEEYARRLGFNSKVGQSSRSNPDGTTTAREFVCGKEGVKRRHGDS--------------CDAMLRIESRGGNRWVSTK 127 7***************************************998877..............******************* PP FAR1 81 leleHnHela 90 +++eH+H+la FANhyb_rscf00000839.1.g00001.1 128 FVKEHSHALA 137 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-11 | 63 | 137 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.9E-31 | 274 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.029 | 552 | 588 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.4E-9 | 554 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.8E-7 | 563 | 590 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence Send to blast |
MDVQVIDVRA VGHSGMGDDG DAERSEGGEV NNGENPQAHV EEGEIPEPYV GMEFHSEEAA 60 KNLYEEYARR LGFNSKVGQS SRSNPDGTTT AREFVCGKEG VKRRHGDSCD AMLRIESRGG 120 NRWVSTKFVK EHSHALANPS PVHYLRPRRH FAGAAKNLAE AYQGVGIVPS GVMYVSMDGN 180 RASLEKNRLV RSASSAESNR QVKNAAPVNP IRPCSRRRTL GKDAQNLLEY FKKMQAENPG 240 FFYAIQLDED NHMGNVFWSD ARTRAAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ 300 TILFGCALLL DESEASFNWL FKTFLTAMND RRPVSITTDQ DRAIQTAVSQ VFPEVRHCIS 360 KWHVLREGQE RLAHVCQAHP NFQVELYNCI NLTETIEEFE LSWDCILDKY DLRRNDWLQS 420 LYSARAQWVP VYFRDSFFAA IAPNQGFEVS FFEGYVNQQT TLPLFFRQYE RALENWFERE 480 VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF 540 RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKNGTG LDERSGELHD QESLTLRYNH LCREAIRYAE DGATTIETYN AAMTALRDGG 660 KKVSVVKRNV AKVTPPSSQV TGTGYEDKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP 720 GQSVSDLNLP RMAPVSLLRD DGTPENMVVL PQLKSMTWVM ENKNSAPGNR VAVINLKLHD 780 YSRIPSVESE VKFQLSRVSL EPMLRSMAYI SEQLSTPANK VAVINLKLQD TDTSTGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSTALYIH YGRAESSFVD QCFVGYKEDN VFGGNVGLLI 900 AGSDGEMWFS IPTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011469265.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2P6SCJ0 | 0.0 | A0A2P6SCJ0_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004307013.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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