PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000808.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 414aa    MW: 47256.1 Da    PI: 9.3008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000808.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.26.9e-1157110254
                            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarla 54 
                                     ++lL++cAe +s+ d++ a+ l++ l     sp+gd+++Rl++ f++AL+ rl 
  FANhyb_rscf00000808.1.g00004.1  57 RQLLIRCAELISQLDFSSAHGLISILASSnYSPHGDSTERLVHQFVRALSLRLP 110
                                     79************************88769********************996 PP
2GRAS252.41.7e-77165413130373
                            GRAS 130 qaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpg 199
                                     qaL +R+     ++pp lRiT+ g+    + + l++tgerL +fA++lg++f+f+++     +  ++ l++ +L + p+
  FANhyb_rscf00000808.1.g00004.1 165 QALVERSygsssSPPPLLRITATGR----DLTLLRRTGERLLRFAQSLGLTFHFRPIvllnDVAMIDYLNPASLGLFPN 239
                                     8899998776667799*********....9**************************9654434468889********** PP

                            GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                                     EalaVn+vl lhrll +++   +    +L+ ++ l+Pk+v+v+e+ea+hns+ Fl+rf+ea+++y a+f slea+lp++
  FANhyb_rscf00000808.1.g00004.1 240 EALAVNCVLYLHRLLTDDARDLH---LFLDKIRALNPKIVTVAEREANHNSPMFLNRFVEAVDHYGAVFGSLEATLPPN 315
                                     ***************77666666...9**************************************************** PP

                            GRAS 279 seerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                                     s+er  vE++++grei +vv +  ++  ++ rhe++e+W+++++++GF++vpls +a +qaklllr ++ s+gy++++ 
  FANhyb_rscf00000808.1.g00004.1 316 SRERLAVEQMWFGREIADVVVADDDQkrKQLRHERYENWEMMMRRSGFSNVPLSPFALSQAKLLLRLHYpSEGYQLHSL 394
                                     *******************9988776324559*********************************************** PP

                            GRAS 355 sgslvlgWkdrpLvsvSaW 373
                                     ++s++lgW++rpL+svS+W
  FANhyb_rscf00000808.1.g00004.1 395 KDSFFLGWMNRPLFSVSSW 413
                                     ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.23930393IPR005202Transcription factor GRAS
PfamPF035142.4E-857110IPR005202Transcription factor GRAS
PfamPF035145.8E-75165413IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLMGSFNSSH HQRIVPQQQE DQDHPQIHSD LQLYNQHHHQ YQIPQPPLLM SRGLTARQLL  60
IRCAELISQL DFSSAHGLIS ILASSNYSPH GDSTERLVHQ FVRALSLRLP PVAAAPRDIA  120
WCRRRHWTIS RLHPELVIAR GGDGSGRRDA SVVLLNPKPD NPIHQALVER SYGSSSSPPP  180
LLRITATGRD LTLLRRTGER LLRFAQSLGL TFHFRPIVLL NDVAMIDYLN PASLGLFPNE  240
ALAVNCVLYL HRLLTDDARD LHLFLDKIRA LNPKIVTVAE REANHNSPMF LNRFVEAVDH  300
YGAVFGSLEA TLPPNSRERL AVEQMWFGRE IADVVVADDD QKRKQLRHER YENWEMMMRR  360
SGFSNVPLSP FALSQAKLLL RLHYPSEGYQ LHSLKDSFFL GWMNRPLFSV SSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-32179414157379Protein SCARECROW
5b3h_A2e-32179414156378Protein SCARECROW
5b3h_D2e-32179414156378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024160724.11e-172scarecrow-like protein 18
SwissprotQ9ZWC57e-97SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2P6QL501e-171A0A2P6QL50_ROSCH; Putative transcription factor GRAS family
STRINGXP_004296106.11e-171(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.15e-80GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]