PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000800.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 614aa    MW: 70372 Da    PI: 9.6075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000800.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07456518147
                                     TSSS-HHHHHHHHHHHHH.TTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkq.lGgg................tWktIartmgkgRtlkqcksrwqky 47 
                                     +g W++eE e l d+v++ l ++                +W++I++t+g +Rt   c ++w++ 
  FANhyb_rscf00000800.1.g00002.1 456 KGQWSQEEYENLFDLVNKdLRMKvfeekktkhgmlrdniCWEAISETLG-TRTNAVCSLKWYNQ 518
                                     799*************8757777**************************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.7326403IPR001005SANT/Myb domain
PROSITE profilePS500906.237401450IPR017877Myb-like domain
SMARTSM007173405452IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-6406467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-6408460IPR009057Homeodomain-like
PfamPF139212.1E-9409467No hitNo description
PROSITE profilePS500908.525451519IPR017877Myb-like domain
SMARTSM007170.012455521IPR001005SANT/Myb domain
CDDcd001670.00637459517No hitNo description
Gene3DG3DSA:1.10.10.601.6E-9461519IPR009057Homeodomain-like
SuperFamilySSF466892.26E-6499577IPR009057Homeodomain-like
PROSITE profilePS500906.458521574IPR017877Myb-like domain
SMARTSM0071737525576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MGRKEMTSLE FKSGKEKKKH KKKGKEEANK DELERNFSVL EVGEKMGTDV VQTEDDNSGG  60
NHMISGEGAN KKKKRKREKE GDEMVIENMI DKKELLNEGE KSVGRTMEKL DSTGHVKKRK  120
KILEDVKKGM ATEYEDVAKI TNKGGNKKKK DKKQKKEKKE KKVKKEKREN VDGELGQNIS  180
SDGIEAGVAS KRVDGHIVEK GGLSLEKGRK EKRKHGKKSG TELQESVAED MGTDCNRKSE  240
AVDVENSKKG KKSKSQKHGI VEGCNEDKKK ARSSKSSLKA QKGIGAPDNS EESAPKKALK  300
RVSFADDVEV FSPSDGPSDE HQDLVRGKRF SKEEDKIVEE AVLRYIDEHA LGDDGLDMVL  360
RCKSHPEVKN HPELKTCWKD IGAALPWRPF KSVYYRAHIL FERAEKRKWS PEEYEEVRKF  420
HKDKGADWRT LGDKLGKHRI HVKDAWRRIK LPNMKKGQWS QEEYENLFDL VNKDLRMKVF  480
EEKKTKHGML RDNICWEAIS ETLGTRTNAV CSLKWYNQLT SPLVSQKLWS DIDDYRLLDA  540
LNSLDACCIE DVDWDDLLEH RPGDVCQKRW YQMVKHIGQH ALKSFPEQVE VLSKRYLADL  600
IEAREIYANK PAVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17078KKKKRKREK
2116120KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291570.10.0PREDICTED: RNA polymerase I termination factor
RefseqXP_011459291.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLA0A2P6QH270.0A0A2P6QH27_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004291570.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-124MYB_related family protein