PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000789.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 681aa    MW: 75999 Da    PI: 8.7611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000789.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-08588637147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                     r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  FANhyb_rscf00000789.1.g00005.1 588 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 637
                                     678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.897583642IPR017930Myb domain
SMARTSM007171.1E-7587640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10588638IPR009057Homeodomain-like
SuperFamilySSF466899.4E-16589670IPR009057Homeodomain-like
CDDcd116607.89E-17589639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MVPQRKVDYG FNGYQMPEVP RASRSARGKG PIRKKLEDNQ THAFEILASV AGKLLESENP  60
LPSNASCGKD PHYMVDDIIG KQQTEGNSLK EEPCELGSWE EEASQRACGV QGYQQSHTLN  120
QFSHPQENFS FEMSTTSKSN DHSGKVCFAK KLGAVDSSSS CGSYSNKVIS DCPLSGDLID  180
EEEKEHAVRK RKLEAEPSKD TNIKDANAHV LVCSEDLIEM KGNPPELVSS EHDVKEPFSG  240
DCKIHGSFLC HCVKVISRDD DENSVGYVQP CTIVEEFEHK PNVGDRKIKN MSASKRWRIA  300
PDMKIGGYHR TGNWLYNPLL SQVEYSFDIE LMLLDGKVYR NGRPCYAHQR SQKIYPFKKR  360
KFFNQKPFAT SDRGCNCENI VSSPENREDG GNCNAASGRS SSATGREPLK SSDRNVRLSI  420
KSFKVPELFF EIPATATVGS LKIVVLFITL GFGNERTVME AVTSILGDGL HVGMLLQGKK  480
VRDDNKTLLQ TGISHDDKLD NLGFSLEPKH TKLMYSQCGD DPSSVSGRRQ ELIRLKSSTP  540
PPASTSIDKS PPVSQALVAV PPITAKPLAV VPFHRRSGHS AYVQRRMRRP FSVSEVEALV  600
QAVEKLGTGR WRDVKMRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR  660
VLAAHAYWSQ RQAKQQLRVA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-535726771106Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351360QKIYPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302721.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011466551.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011466552.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A2P6RA030.0A0A2P6RA03_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004302721.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-101TRF-like 2