PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000772.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 315aa    MW: 34610.4 Da    PI: 8.6817
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000772.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0596118123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC+ C++ Fs++  L  H++ H
  FANhyb_rscf00000772.1.g00005.1  96 FKCNFCNRNFSTSQALGGHQNAH 118
                                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-793123No hitNo description
Gene3DG3DSA:3.30.160.601.2E-494122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.98896123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEKPILLEVC ANSSEASSII SAASEKKKNT MKMKEINVDD ESQQPGKPEV LVAEVSGANV  60
ELALFKDNPP PEEEASEEIN GKRGQQKKEK EETRVFKCNF CNRNFSTSQA LGGHQNAHKP  120
ERQLAKRRSQ GLDAGGGFGL GQSYYPYNFS PYSSSTFSPH YSLYGSRSTS SLGVRLDSMI  180
HKPAYTPWYD RLGGGGGWSR PASSSLLQNH SNNDHKLIFQ QGLKNNINTN ELGLGVRKFN  240
ASSRLEESST IRTGAFRNIG GGTWNLNAIN NNNNSNKKPP QTPPLSCSTD LLSQVERPPK  300
CDKDGDNDID LTLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463584.10.0PREDICTED: zinc finger protein 4-like
TrEMBLA0A2P6SAW67e-56A0A2P6SAW6_ROSCH; Putative transcription factor C2H2 family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-13C2H2 family protein