PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000734.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 444aa    MW: 48853.6 Da    PI: 7.5341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000734.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19253303256
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                      y+GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  FANhyb_rscf00000734.1.g00006.1 253 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEGAASAYDTAAYMLRGE 303
                                     59******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.83E-32252312No hitNo description
SuperFamilySSF541715.75E-22253312IPR016177DNA-binding domain
SMARTSM003801.8E-35253316IPR001471AP2/ERF domain
PROSITE profilePS5103222.919253310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31253312IPR001471AP2/ERF domain
PfamPF008471.4E-12254303IPR001471AP2/ERF domain
PRINTSPR003671.8E-10254265IPR001471AP2/ERF domain
PRINTSPR003671.8E-10276292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEGEPVISLS CQALIGSNET FRNIGKHELS ATGNGRCFEA KFFTMDDDFP KKETFIPKQL  60
PYFPGIASST GSNFLGDPAG WEIGGLKSSL SPESSTSSSA DEVTGNSTLI NNTYPFVPVN  120
FLETFPKADH VSDQPPTSPA SLSSKPSKLP NLTLFLQEPT TLLDPSSTKK CDDSMLSSLT  180
PSFPIPHLEH CQTGFDQWLK ISQTLANNPS KGFNDYWLSA TKTQPMKCSG RSRFQNQQEK  240
QPSAPIPSAQ GKLYRGVRQR HWGKWVAEIR LPRNRTRVWL GTFDTAEGAA SAYDTAAYML  300
RGEYAHLNFP DSKHQLKANA LNGSTSTTAA LLEAKLQLAI SQQANKKTNT MESSSSSSPP  360
SPKKKKQSSA DDRDQKNSNL IINSNLISQN PSTRKEWQYG SDQVIFESKK SQDVISSSDM  420
DAVQLSRMPS LDMDMIWDAL LVSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20249310163ATERF1
3gcc_A1e-20249310163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359366PSPKKKKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296759.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A3Q8TB160.0A0A3Q8TB16_FRAAN; Transcription factor ERF2
STRINGXP_004296759.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.16e-66ERF family protein