PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000673.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 496aa MW: 56107.3 Da PI: 8.1863 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.7 | 9.7e-32 | 249 | 400 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.........vikev.diykvePwdLpkkvkaeekewyfF 61 lp+G++F+Ptd+e++ ++L+ kv +++ + + +i+ +i++++P++Lp v+++ +fF FANhyb_rscf00000673.1.g00001.1 249 LPAGVKFDPTDQEVL-QHLEGKVLSSTdiaagnklH---HhplidqfipTIEGEnGICYTHPHKLP-GVSKDGLVRHFF 322 799**********99.99****99999766665540...15556665544666657**********.555666688*** PP NAM 62 skrdkkyatgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +k+y+tg+rk+r+ + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l FANhyb_rscf00000673.1.g00001.1 323 HRPSKAYTTGSRKRRKvhtdrdssgeGGETRWHKTGKTRPVFA-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 400 ***************7566666655433778************.9*************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13963 | 1.0E-14 | 4 | 77 | IPR029480 | Transposase-associated domain |
SuperFamily | SSF101941 | 1.29E-36 | 243 | 419 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.389 | 249 | 419 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-14 | 250 | 400 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MDKTWVFLDR ESDEYISGLR LFIDRAQSIS PVLGKIYCPC KECKNRWRHG LKDVENHILC 60 VGMWNDYVNI PWTSHGEQLP IINEEATHPS SPQQVMPNHD MADMLQDAFG FHDHMTMPSS 120 PEVVGAENSN SSVDAQKFYK LLEDANIDLF LGARVKKLEF LVRLYDIKSS HSNSDGSFEE 180 TLDLLRDTFP KSTTLPKNFH ETKKLIKDIG LSKTQTIIAK DGLTTRTCPS CGYQIKYQQQ 240 AGIQNLPGLP AGVKFDPTDQ EVLQHLEGKV LSSTDIAAGN KLHHHPLIDQ FIPTIEGENG 300 ICYTHPHKLP GVSKDGLVRH FFHRPSKAYT TGSRKRRKVH TDRDSSGEGG ETRWHKTGKT 360 RPVFAGGKVK GYKKILVLYT NYGKQRKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFFQT 420 QPRQCGNSGM KDFNNNSAAK VLMNGQSEHS EALVQYCNNV NSFISFDQNG QDRSSSNPQI 480 IPRHFPLHDG SFVSLK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305430.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
TrEMBL | A0A2P6SQM5 | 0.0 | A0A2P6SQM5_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004305430.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-113 | NAC domain containing protein 73 |