PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000673.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 496aa    MW: 56107.3 Da    PI: 8.1863
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000673.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.79.7e-322494001128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.........vikev.diykvePwdLpkkvkaeekewyfF 61 
                                     lp+G++F+Ptd+e++ ++L+ kv +++        +   +         +i+   +i++++P++Lp  v+++    +fF
  FANhyb_rscf00000673.1.g00001.1 249 LPAGVKFDPTDQEVL-QHLEGKVLSSTdiaagnklH---HhplidqfipTIEGEnGICYTHPHKLP-GVSKDGLVRHFF 322
                                     799**********99.99****99999766665540...15556665544666657**********.555666688*** PP

                             NAM  62 skrdkkyatgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                     ++ +k+y+tg+rk+r+            + +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  FANhyb_rscf00000673.1.g00001.1 323 HRPSKAYTTGSRKRRKvhtdrdssgeGGETRWHKTGKTRPVFA-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 400
                                     ***************7566666655433778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139631.0E-14477IPR029480Transposase-associated domain
SuperFamilySSF1019411.29E-36243419IPR003441NAC domain
PROSITE profilePS5100531.389249419IPR003441NAC domain
PfamPF023651.8E-14250400IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDKTWVFLDR ESDEYISGLR LFIDRAQSIS PVLGKIYCPC KECKNRWRHG LKDVENHILC  60
VGMWNDYVNI PWTSHGEQLP IINEEATHPS SPQQVMPNHD MADMLQDAFG FHDHMTMPSS  120
PEVVGAENSN SSVDAQKFYK LLEDANIDLF LGARVKKLEF LVRLYDIKSS HSNSDGSFEE  180
TLDLLRDTFP KSTTLPKNFH ETKKLIKDIG LSKTQTIIAK DGLTTRTCPS CGYQIKYQQQ  240
AGIQNLPGLP AGVKFDPTDQ EVLQHLEGKV LSSTDIAAGN KLHHHPLIDQ FIPTIEGENG  300
ICYTHPHKLP GVSKDGLVRH FFHRPSKAYT TGSRKRRKVH TDRDSSGEGG ETRWHKTGKT  360
RPVFAGGKVK GYKKILVLYT NYGKQRKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFFQT  420
QPRQCGNSGM KDFNNNSAAK VLMNGQSEHS EALVQYCNNV NSFISFDQNG QDRSSSNPQI  480
IPRHFPLHDG SFVSLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305430.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A2P6SQM50.0A0A2P6SQM5_ROSCH; Putative transcription factor NAM family
STRINGXP_004305430.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-113NAC domain containing protein 73