PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000669.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 770aa    MW: 83832 Da    PI: 6.3495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000669.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16440486455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  FANhyb_rscf00000669.1.g00002.1 440 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 486
                                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.84E-17432490No hitNo description
Gene3DG3DSA:4.10.280.102.5E-20433494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-20433499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13440486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MPLSELLSRG RSDSNQDFEP LSDLVELVWE NGQIMMQSQS NRARKSPTFN SLPSHTPRNR  60
DRDLGNGSNG KMGKFGSVDY VIDEIPLSVP SGEMGLSDDD DMLPWLNYAL DQPFQHEYSH  120
DFMPEISGVT ANEISTNGNL TPIDKRSSSS QMYRESNTNS TPGLEQRNVL KLSSVSAAEA  180
SRPRTSTTHL YQMSSQQPQA SIPSLRSIAS DMVSGNTSSA AHHAVCKSSI QASPAGGFRG  240
IPMQKQNPPT SSTNNSTIVN FSHFSRSSLL KVEKVKNKDK VSAATSSNPP ESMLIESSCG  300
LMKESTSQCQ DVMAPSSVDM KPTASKPLEE PHTTKQSEAA YQEDPSKNDD RNSNHIPCES  360
AIRPLPDVEK TTEPVVDSSV CSVNSVEKAS DDPTHVLKRK SRDTDDSECQ SEDVEEESVG  420
VKKVAHGRGT GSKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPNCNKVD KASMLDEAIE  480
YLKTLQLQVQ IMSMGAGLYM PQMMLPPGMQ HMHAPRMAHF SHMGMGMGLG MGFGMGLPDM  540
NGGSSGYPML QVPPMQGAHF PGSPMSGHTA FNGMIGSNLQ MFGLPGQGVS MPMQHPPIVP  600
ISGGPFMKVV GPNACGAGGP VENMEPAPGS SSKDSVQNMN SQIMQNINTN SSMNQTSNQA  660
TTEGFGQSAL VQNNVQALDV STSRANRSTN GKDHVMSNKQ FFYYGRTEIL SATILEWIFC  720
LLLIRVDTFT EKGTSESMRL NLYNNPLSSS FKSTITYCID FGTSICTFTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302325.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_011466209.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A2P6R7W80.0A0A2P6R7W8_ROSCH; Putative transcription factor bHLH family
STRINGXP_004302325.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-50phytochrome interacting factor 3