PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000666.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34937.7 Da    PI: 4.3549
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000666.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-1879129656
                                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     ++t++q++ Le+ F  ++++  e++  LAk lgL+ rqV +WFqNrRa++k
  FANhyb_rscf00000666.1.g00008.1  79 RLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 129
                                     5799**********************************************9 PP
2HD-ZIP_I/II1231.4e-3978165491
                     HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                      rl+++qv++LE+sF+ e+kLeperK  la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L k
  FANhyb_rscf00000666.1.g00008.1  78 XRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQANYNSLKADCDSLCK 156
                                     69***************************************************************************** PP

                     HD-ZIP_I/II  83 eveeLreel 91 
                                     e+++L++e+
  FANhyb_rscf00000666.1.g00008.1 157 ENDKLKAEV 165
                                     ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-1864133IPR009057Homeodomain-like
PROSITE profilePS5007116.81171131IPR001356Homeobox domain
SMARTSM003891.7E-1673135IPR001356Homeobox domain
PfamPF000461.6E-1579129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-2079139IPR009057Homeodomain-like
CDDcd000863.38E-1679132No hitNo description
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PfamPF021838.2E-16131173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGGGRVYNS SGGASFLLRN QRGSSASEPL DSLFLSGSSN ASSTSPFLGT SLVLNPYSQL  60
AYSVLSFLID XXXXXXXXRL TADQVQFLEK SFDLENKLEP ERKILLAKDL GLQPRQVAIW  120
FQNRRARWKT KQLEKDYDVL QANYNSLKAD CDSLCKENDK LKAEVLLLSE RLQLKDKERA  180
NSEQSDTNKS HQEPQQMPIA ESVSSEGEVS KLSVVACKED LSSVKSDIFD SDSPHYTDGV  240
HSSLLERDDS SYIFEPDQSD LSQDEEDNLS KSLLPTYIFP KLEDVDYTDP PANSCNFGFP  300
VEDQAFWSWS Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299399.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2P6P2E71e-177A0A2P6P2E7_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004299399.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-42homeobox 1