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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000663.1.g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 31271 Da PI: 4.5019 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 118.4 | 6.8e-37 | 83 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrF Ptdeelvv++L++k++ +l+ +vi+++d+y ++Pw+L+ k+ e k+wyf+s+r +nr+t+ FANhyb_rscf00000663.1.g00006.1 83 LPPGFRFFPTDEELVVHFLQRKAALLPLHP-DVIPDLDLYPYDPWELNGKALCEGKQWYFYSRRT--------QNRVTS 152 79*************************999.99**************97777789*******984........58**** PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWk g++++++s+ +++ vg+k+ + fy g+a++g kt+W+mheyrl FANhyb_rscf00000663.1.g00006.1 153 NGYWKPLGTEEPIISSiSNNRVGIKRYFGFYVGEASSGIKTNWTMHEYRL 202 **************9988899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-47 | 77 | 240 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.271 | 83 | 241 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-22 | 84 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MMSEEYGLIY ENPMFRNSYA TVLLVDAKSL INEPLSLLFA YVIEDLLTTQ PVPSYSNWIE 60 STSDSALLRF KSTGELSNNP FQLPPGFRFF PTDEELVVHF LQRKAALLPL HPDVIPDLDL 120 YPYDPWELNG KALCEGKQWY FYSRRTQNRV TSNGYWKPLG TEEPIISSIS NNRVGIKRYF 180 GFYVGEASSG IKTNWTMHEY RLSSVSDTCA SSSTTRSSKR RGHRKAVNEF SGFVLCRVYE 240 RNEDEEDDDG TELSCLDEVF LSLDDLDEIS LPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-39 | 83 | 246 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-39 | 83 | 246 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024174064.1 | 1e-133 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 1e-80 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2P6P8X7 | 1e-132 | A0A2P6P8X7_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004309284.1 | 1e-127 | (Fragaria vesca) | ||||
STRING | XP_004309349.1 | 1e-127 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-81 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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