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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
FANhyb_rscf00000663.1.g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
NAC |
Protein Properties |
Length: 273aa MW: 31271 Da PI: 4.5019 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
FANhyb_rscf00000663.1.g00006.1 | genome | kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 118.4 | 6.8e-37 | 83 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79
lppGfrF Ptdeelvv++L++k++ +l+ +vi+++d+y ++Pw+L+ k+ e k+wyf+s+r +nr+t+
FANhyb_rscf00000663.1.g00006.1 83 LPPGFRFFPTDEELVVHFLQRKAALLPLHP-DVIPDLDLYPYDPWELNGKALCEGKQWYFYSRRT--------QNRVTS 152
79*************************999.99**************97777789*******984........58**** PP
NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+gyWk g++++++s+ +++ vg+k+ + fy g+a++g kt+W+mheyrl
FANhyb_rscf00000663.1.g00006.1 153 NGYWKPLGTEEPIISSiSNNRVGIKRYFGFYVGEASSGIKTNWTMHEYRL 202
**************9988899***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010089 | Biological Process | xylem development |
GO:0043067 | Biological Process | regulation of programmed cell death |
GO:0048367 | Biological Process | shoot system development |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MMSEEYGLIY ENPMFRNSYA TVLLVDAKSL INEPLSLLFA YVIEDLLTTQ PVPSYSNWIE 60 STSDSALLRF KSTGELSNNP FQLPPGFRFF PTDEELVVHF LQRKAALLPL HPDVIPDLDL 120 YPYDPWELNG KALCEGKQWY FYSRRTQNRV TSNGYWKPLG TEEPIISSIS NNRVGIKRYF 180 GFYVGEASSG IKTNWTMHEY RLSSVSDTCA SSSTTRSSKR RGHRKAVNEF SGFVLCRVYE 240 RNEDEEDDDG TELSCLDEVF LSLDDLDEIS LPN
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-39 | 83 | 246 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-39 | 83 | 246 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-39 | 83 | 246 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-39 | 83 | 246 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |