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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
FANhyb_rscf00000642.1.g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
NAC |
Protein Properties |
Length: 361aa MW: 39901.3 Da PI: 7.208 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
FANhyb_rscf00000642.1.g00006.1 | genome | kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.9 | 2e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++
FANhyb_rscf00000642.1.g00006.1 15 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAAT 92
79****************************.89***************8888999************************ PP
NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
sgyWkatg+dk++l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
FANhyb_rscf00000642.1.g00006.1 93 SGYWKATGTDKPILTSnGSQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
*************99867888***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MESTDSSSGS GHPQLPPGFR FHPTDEELVV HYLKKKAASV PLPVTIIAEI DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG SQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLINDDNSSA ALKPPDPTNK KASLRLDDWV LCRIYKKNNA 180 QRPMMECDHH LHKEEDSTTN SMEGIFVQSM TKPSPQKAAT NYTALLENDE EDNFFDGILS 240 SEGVQNSSHS NLSHQFMSSS KSDVVVMPVN NNNSKRQLPS PFWNEEGGSS SMGTNNSSSS 300 KRFHTDLNGG GGSGGGVDES NASFVSMLNQ NAAFHHNSLL GSLGDGVLRP QFHLPSMNWN 360 S
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-76 | 15 | 180 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-76 | 15 | 180 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |