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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000642.1.g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 39901.3 Da PI: 7.208 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.9 | 2e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++ FANhyb_rscf00000642.1.g00006.1 15 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAAT 92 79****************************.89***************8888999************************ PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk++l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl FANhyb_rscf00000642.1.g00006.1 93 SGYWKATGTDKPILTSnGSQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 *************99867888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-65 | 9 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.249 | 15 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MESTDSSSGS GHPQLPPGFR FHPTDEELVV HYLKKKAASV PLPVTIIAEI DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG SQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLINDDNSSA ALKPPDPTNK KASLRLDDWV LCRIYKKNNA 180 QRPMMECDHH LHKEEDSTTN SMEGIFVQSM TKPSPQKAAT NYTALLENDE EDNFFDGILS 240 SEGVQNSSHS NLSHQFMSSS KSDVVVMPVN NNNSKRQLPS PFWNEEGGSS SMGTNNSSSS 300 KRFHTDLNGG GGSGGGVDES NASFVSMLNQ NAAFHHNSLL GSLGDGVLRP QFHLPSMNWN 360 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-76 | 15 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-76 | 15 | 180 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-76 | 15 | 180 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-76 | 15 | 180 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293567.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 1e-118 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A286LLT3 | 0.0 | A0A286LLT3_ROSCH; NAC family protein | ||||
STRING | XP_004293567.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-120 | NAC domain containing protein 25 |