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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
FANhyb_rscf00000590.1.g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
NAC |
Protein Properties |
Length: 331aa MW: 37030.4 Da PI: 9.6127 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
FANhyb_rscf00000590.1.g00003.1 | genome | kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 130.1 | 1.6e-40 | 18 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79
lppGfrFhPtdeelvv+yLkkk+++ +l+ +++ ++ ++ +e+ewyfFs+rd+ky++g r+nra++
FANhyb_rscf00000590.1.g00003.1 18 LPPGFRFHPTDEELVVHYLKKKASSAPLPH---------CHHRRKK----ATFGEQEWYFFSPRDRKYPNGARPNRAAT 83
79*************************877.........3333233....334789*********************** PP
NAM 80 sgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
sgyWkatg+dk+vls+ ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl
FANhyb_rscf00000590.1.g00003.1 84 SGYWKATGTDKPVLSStdegggGTRKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 138
***************98888877778***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MESTDSSSGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKA SSAPLPHCHH RRKKATFGEQ 60 EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSST DEGGGGTRKV GVKKALVFYR 120 GKPPKGIKTN WIMHEYRLAD NNTSNKPPPG CHDLGNKKNS LRLDDWVLCR IYKKNNTHRP 180 MDQEDSMDDM MGSSFPLSKL HRLPPKSTTS TYGQFMDNDH NFYDGMVSSE GINTSASFLP 240 NSGMANSSLP LKRGLPNLYW NHDQEDEAGL SRRLHLDNSE STGNGSIATL LSQLPQTPPP 300 LHQQPMLGSQ LGGDALFRST QYQLPGMNWY S
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-55 | 10 | 177 | 9 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 10 | 177 | 9 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 10 | 177 | 9 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 10 | 177 | 9 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 10 | 177 | 12 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 10 | 177 | 9 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 10 | 177 | 9 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 36 | 53 | KKKASSAPLPHCHHRRKK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |