PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YA

Protein Properties

Length: 366aa MW: 40172.3 Da PI: 7.9193

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000511.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102	5.5e-32	195	251	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF FANhyb_rscf00000511.1.g00001.1 195 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHRHAMRRARGTGGRF 251 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.5E-35	193	254	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.866	194	254	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.8E-28	196	251	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.0E-24	197	219	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	199	219	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.0E-24	228	251	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010262	Biological Process	somatic embryogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MAKCPYVAYL VSPICNDLEY CFLSTGMQPK SETENRIRVD HHTIPPSTVS SEPWWRTGYN 60 PTSPTVTGRN VSTSSSFEPP KSHSESSDDK SVSDDGSNED DDNAKESHLT SPLSVGNKNQ 120 DLQLDSSTVP TVHDEGVTHP PQLELIGHSI ACASNPYQDP YYAGMMAAYG HQPLGYPPFV 180 GMPHARMPLP LEMAQEPVYV NAKQYQGILR RRQARAKAEL EKKLIKVRKP YLHESRHRHA 240 MRRARGTGGR FAKKTNGDTL KTGGQEKASH SSQSASSSGS EPLPSDSAET WNSSISQQEA 300 SRPQVHDAYA TNNYVNGSGC YQTHGGLQAS LYRTYSGKRG DEGDCMGQQR GSISSNQGSQ 360 RRLAIQ

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MAKCPYVAYL VSPICNDLEY CFLSTGMQPK SETENRIRVD HHTIPPSTVS SEPWWRTGYN  60
PTSPTVTGRN VSTSSSFEPP KSHSESSDDK SVSDDGSNED DDNAKESHLT SPLSVGNKNQ  120
DLQLDSSTVP TVHDEGVTHP PQLELIGHSI ACASNPYQDP YYAGMMAAYG HQPLGYPPFV  180
GMPHARMPLP LEMAQEPVYV NAKQYQGILR RRQARAKAEL EKKLIKVRKP YLHESRHRHA  240
MRRARGTGGR FAKKTNGDTL KTGGQEKASH SSQSASSSGS EPLPSDSAET WNSSISQQEA  300
SRPQVHDAYA TNNYVNGSGC YQTHGGLQAS LYRTYSGKRG DEGDCMGQQR GSISSNQGSQ  360
RRLAIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	195	259	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	244	RHRHAMRRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291784.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1
Refseq	XP_011459505.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1
Swissprot	Q945M9	8e-80	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A2P6QFL8	0.0	A0A2P6QFL8_ROSCH; Putative transcription factor Hap2/NF-YA family
STRING	XP_004291783.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	1e-76	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]