PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000504.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 762aa MW: 85122.1 Da PI: 8.2885

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000504.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.9e-12	114	154	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +++++g +R + qc+++++ FANhyb_rscf00000504.1.g00005.1 114 WNADEEMLLLEGIEMYGFGNWTEVSEHVG-TRRRQQCIDHYN 154 ***************************.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00291	1.5E-11	50	95	IPR000433	Zinc finger, ZZ-type
PROSITE profile	PS50135	10.587	54	97	IPR000433	Zinc finger, ZZ-type
CDD	cd02335	9.19E-25	54	102	No hit	No description
Pfam	PF00569	9.9E-8	54	86	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF57850	1.41E-13	54	117	No hit	No description
PROSITE pattern	PS01357	0	56	83	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF46689	4.04E-12	107	160	IPR009057	Homeodomain-like
PROSITE profile	PS51293	20.877	109	161	IPR017884	SANT domain
SMART	SM00717	1.9E-11	110	159	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-12	113	154	IPR001005	SANT/Myb domain
CDD	cd00167	8.05E-12	114	154	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.1E-9	114	156	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-11	463	524	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MGRSRAVAQS APGDSNQSRG KRKRTASGAE VAENSSAAQK GLAQELSEPK GAFYHCNYCQ 60 KDISGKIRIK CGVCPDFDLC IECFSVGVEV TPHKCNHPYR VMDNLSFPLI CPDWNADEEM 120 LLLEGIEMYG FGNWTEVSEH VGTRRRQQCI DHYNAIYMNS PCFPLPDMSR VMGKSREDLL 180 ALSKGSGEIK KELPMFMEIT LKEESPFSPR VKSEEPKKTA ASKASSHSTA DGVSGAGKKA 240 SNKLQIKDEP KVTKVEESQR SIGGKKLRSL VEEGPSVTEL SGYNYKRQEF EIEYDNDAEQ 300 ILADMEFHDT DTDGDRELKL RVLHVYGKKF STSYSQTLCG NLDRLDERKR RKDFVLERNL 360 LHPDPLEKNL SPEVREIHQR FKVFMRFHSN EDHKELLKSI IEEQQIVKRI LDLQEARAAG 420 CRTATEASNY LEQKRKNETP WGAARGSAIL HPGPKDLSLI TQPISNSLDD WDISGLMGAD 480 LLSETEKRLC CELRILPSHY LHMLQTISTE TLNGNVKKKS DSPQPLQATK DPSLDILPVD 540 RHPIYLAMVK DHRYHIRNVI LQAPQEGTMI RDMCTLSHIV HVQPCFYIAS EIMQKHLTPS 600 VVNVTKSHVA LPPRGGSLMS MRAIGPSSRP QAQGSVGSPV SVTAGHSVGS SFQRANKPSN 660 LVQQSSGLSH QVACPYCYST SLSNVAKFNS IPGPFLLVMD LPLFSFSSNL SAFIKFLLKT 720 SEFKCSFQTL NARFQCKVED RADKLAVGKG TSVLKLEARL SR

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MGRSRAVAQS APGDSNQSRG KRKRTASGAE VAENSSAAQK GLAQELSEPK GAFYHCNYCQ  60
KDISGKIRIK CGVCPDFDLC IECFSVGVEV TPHKCNHPYR VMDNLSFPLI CPDWNADEEM  120
LLLEGIEMYG FGNWTEVSEH VGTRRRQQCI DHYNAIYMNS PCFPLPDMSR VMGKSREDLL  180
ALSKGSGEIK KELPMFMEIT LKEESPFSPR VKSEEPKKTA ASKASSHSTA DGVSGAGKKA  240
SNKLQIKDEP KVTKVEESQR SIGGKKLRSL VEEGPSVTEL SGYNYKRQEF EIEYDNDAEQ  300
ILADMEFHDT DTDGDRELKL RVLHVYGKKF STSYSQTLCG NLDRLDERKR RKDFVLERNL  360
LHPDPLEKNL SPEVREIHQR FKVFMRFHSN EDHKELLKSI IEEQQIVKRI LDLQEARAAG  420
CRTATEASNY LEQKRKNETP WGAARGSAIL HPGPKDLSLI TQPISNSLDD WDISGLMGAD  480
LLSETEKRLC CELRILPSHY LHMLQTISTE TLNGNVKKKS DSPQPLQATK DPSLDILPVD  540
RHPIYLAMVK DHRYHIRNVI LQAPQEGTMI RDMCTLSHIV HVQPCFYIAS EIMQKHLTPS  600
VVNVTKSHVA LPPRGGSLMS MRAIGPSSRP QAQGSVGSPV SVTAGHSVGS SFQRANKPSN  660
LVQQSSGLSH QVACPYCYST SLSNVAKFNS IPGPFLLVMD LPLFSFSSNL SAFIKFLLKT  720
SEFKCSFQTL NARFQCKVED RADKLAVGKG TSVLKLEARL SR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cw2_C	4e-36	54	169	5	120	Transcriptional adapter 2
6cw3_E	3e-36	54	169	5	120	Transcriptional adapter 2
6cw3_G	3e-36	54	169	5	120	Transcriptional adapter 2
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	RKRRKD

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303562.1	0.0	PREDICTED: transcriptional adapter ADA2 isoform X1
Swissprot	Q75LL6	0.0	TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBL	A0A251Q648	0.0	A0A251Q648_PRUPE; Transcriptional adapter
STRING	XP_004303562.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1537	17	26

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]