PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000497.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 315aa    MW: 34389.1 Da    PI: 9.1039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000497.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11128174354
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L ++++ +k+L
  FANhyb_rscf00000497.1.g00005.1 128 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAEVIRQVKEL 174
                                     58*************************8.....7***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-9128174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12129176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12129176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.16E-8213279No hitNo description
Gene3DG3DSA:3.30.70.2604.7E-5213262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNKPTRSVTA TAIVVNAIVN AAQSFPLSKL SFWFAPTTRP PGLLFSSFVR IFTMAFYSFN  60
SNPSIGSDYS TLFNPFAHHG SGDGLRNGSV HALPHSLVLD SEKGELVKAP ARVGKKGVSE  120
AKALAALKNH SEAERRRRER INAHLSTLRG LVPCTEKMDK AALLAEVIRQ VKELKKDSLE  180
SSKGFLIPID ADEVKVEHYD SGVGDGTISL RASICCDYRP ELLSDLKEAL DSLHLKMVKA  240
EMATLGNRVH NVFVLTGCKE GNNDAEAYQL LESSIHHALS SVLDKASVSP EYSPRTTLPS  300
KRQRISYFDT SSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460603.10.0PREDICTED: transcription factor bHLH106-like
TrEMBLA0A2P6Q4P41e-162A0A2P6Q4P4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004295576.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-32bHLH family protein