PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000448.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 301aa    MW: 34392.5 Da    PI: 5.3189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000448.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1894145155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++++GVr+++ +g+W+AeIrdp     k+kr +lg+f taeeAa ++++ + +l+g
  FANhyb_rscf00000448.1.g00003.1  94 KKFRGVRQRP-WGKWAAEIRDP---LlKSKRRWLGTFNTAEEAALRYDREAIELRG 145
                                     59********.**********8...3456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.79E-3094151No hitNo description
PfamPF008475.1E-1195145IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2095152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2795151IPR001471AP2/ERF domain
PROSITE profilePS5103221.45695153IPR001471AP2/ERF domain
SMARTSM003807.5E-3295165IPR001471AP2/ERF domain
PRINTSPR003672.4E-996107IPR001471AP2/ERF domain
PRINTSPR003672.4E-9119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDSSHPTTKF TEKRFVTDKL VKPLRHLALP KIVRISFTDQ DATDTSSDDE QQQQQRVTRR  60
VINEVRIEES EAVRVLLAKN QQQKPINSLP EEKKKFRGVR QRPWGKWAAE IRDPLLKSKR  120
RWLGTFNTAE EAALRYDREA IELRGPNART NIIPPPKFPF SDHRSSSNES ISINLSSSNL  180
CSSNMSTSMD QIVVIDEYDS GKECQSNIRS PTSVLSSSDN EWRPVSKEKD GSHFVGYFDG  240
VISPEAILFG ISEPILWEEM NMVPETMLRE DLSDISLDSV GDFRSCKWNA EDFFQDQCGG  300
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1994151158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1994151461ATERF1
3gcc_A3e-1994151461ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468950.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A3Q8TA050.0A0A3Q8TA05_FRAAN; Transcription factor ERF51
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-28cytokinin response factor 5