PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000431.1.g00007.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SBP

Protein Properties

Length: 641aa MW: 71150.3 Da PI: 8.2495

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000431.1.g00007.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.1e-41	147	223	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adls+ak+yhrrhkvC +hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ FANhyb_rscf00000431.1.g00007.1 147 ACQVEDCRADLSNAKDYHRRHKVCVMHSKASEALVGNVMQRFCQQCSRFHVLKEFDEGKRSCRRRLAGHNKRRRKTL 223 5*************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.4E-32	142	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.53	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.27E-37	147	227	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.7E-29	148	221	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	8.0E-7	383	522	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	350	409	438	IPR002110	Ankyrin repeat
SuperFamily	SSF48403	1.01E-8	409	525	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.03E-8	414	523	No hit	No description
SMART	SM00248	92	463	493	IPR002110	Ankyrin repeat
SMART	SM00248	1000	503	533	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MEAFGAKGRG FYGPVATEMR GVGKRSLEWD LNDWKWDGDL FAASPLNSVL SDCRSRQLFP 60 AAPGTPSNAG LSNSCSSGSD DVSPGGNEKG KREVEKRRRG GAVANGELND EARSLNLNLG 120 GQAYPIVEGE GNAGKKTKIA GNSNRTACQV EDCRADLSNA KDYHRRHKVC VMHSKASEAL 180 VGNVMQRFCQ QCSRFHVLKE FDEGKRSCRR RLAGHNKRRR KTLPDTAVNA GSLSDEIGSS 240 YLLISLLRIL SNMNFGFSQA IAHVYIRSYI GHLFISGMKK VEDLGLSSNF FPFIVAEKEV 300 CSEICMLEDV IEAAETADDI QAEPEILETK NRAMDFIHEL GWLLHRSHVK FRLGHLDPNL 360 DLFPFGRFKL LMEFSVDHDW CAVVKKLLKL LFDRTVDAGE HSSVELALLD MAVLHRAVQR 420 NSRPMVELLL RFVPDKGLES EQKKQVEGEG NNFLFKPDGV GPLGLTPLHV AASIDGCEHV 480 LDALTDDPGK VGIEAWKNAR DSTGMTPYDY ASMQGRYSYI NLIQRKISKK LESGHVVVDI 540 PGTILESNSK QKQSDGHRSS KVASFDTEKF DLKALMRGDC KLCSQKLAYG SRRSLVYRPA 600 MLSMVAIAAV CVCVALLFKS TPEVVFIFHP FRWEHLKFGS S

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MEAFGAKGRG FYGPVATEMR GVGKRSLEWD LNDWKWDGDL FAASPLNSVL SDCRSRQLFP  60
AAPGTPSNAG LSNSCSSGSD DVSPGGNEKG KREVEKRRRG GAVANGELND EARSLNLNLG  120
GQAYPIVEGE GNAGKKTKIA GNSNRTACQV EDCRADLSNA KDYHRRHKVC VMHSKASEAL  180
VGNVMQRFCQ QCSRFHVLKE FDEGKRSCRR RLAGHNKRRR KTLPDTAVNA GSLSDEIGSS  240
YLLISLLRIL SNMNFGFSQA IAHVYIRSYI GHLFISGMKK VEDLGLSSNF FPFIVAEKEV  300
CSEICMLEDV IEAAETADDI QAEPEILETK NRAMDFIHEL GWLLHRSHVK FRLGHLDPNL  360
DLFPFGRFKL LMEFSVDHDW CAVVKKLLKL LFDRTVDAGE HSSVELALLD MAVLHRAVQR  420
NSRPMVELLL RFVPDKGLES EQKKQVEGEG NNFLFKPDGV GPLGLTPLHV AASIDGCEHV  480
LDALTDDPGK VGIEAWKNAR DSTGMTPYDY ASMQGRYSYI NLIQRKISKK LESGHVVVDI  540
PGTILESNSK QKQSDGHRSS KVASFDTEKF DLKALMRGDC KLCSQKLAYG SRRSLVYRPA  600
MLSMVAIAAV CVCVALLFKS TPEVVFIFHP FRWEHLKFGS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	140	221	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297084.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
Swissprot	Q9SMX9	1e-112	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2P6QZK7	0.0	A0A2P6QZK7_ROSCH; Putative transcription factor SBP family
STRING	XP_004297084.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-104	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]