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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000425.1.g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23440.9 Da PI: 9.4003 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.9 | 1.3e-18 | 13 | 53 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n++ r+vtf kR++g+lKKA+EL +LCd++ +vii+ s+ FANhyb_rscf00000425.1.g00004.1 13 IQNERSRKVTFRKRKTGLLKKAYELNTLCDVKGCVIIYESN 53 99***********************************9764 PP | |||||||
2 | K-box | 14.5 | 1.5e-06 | 93 | 147 | 11 | 68 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 ++k e+lq++ +kL++++++Lq + ++ Lsl +L +L q++++ ++ +R FANhyb_rscf00000425.1.g00004.1 93 AEKIEQLQTKTRKLRRKNDELQFP---TCDDRMNALSLDQLLSLAQKVDHKIEAVRRS 147 678999****************65...57899***********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-11 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.946 | 3 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-10 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-19 | 7 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.19E-17 | 12 | 50 | No hit | No description |
Pfam | PF00319 | 7.4E-19 | 13 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-10 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-10 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVRSNSRLSW DLIQNERSRK VTFRKRKTGL LKKAYELNTL CDVKGCVIIY ESNSDGQLLQ 60 PEIYPKHEEV KQIINKYASC SSKRVHNLED FYAEKIEQLQ TKTRKLRRKN DELQFPTCDD 120 RMNALSLDQL LSLAQKVDHK IEAVRRSMQC AINHEGRLGP MPMYHNGRAL PEADPVVRVE 180 VKGLDMGDWR EAVEGAQWLG QK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 109 | KLRRKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292021.1 | 1e-121 | PREDICTED: MADS-box transcription factor PHERES 2-like | ||||
TrEMBL | A0A2P6S6E5 | 2e-47 | A0A2P6S6E5_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004292021.1 | 1e-121 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26230 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 1e-16 | AGAMOUS-like 87 |