PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000418.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 609aa    MW: 68453.9 Da    PI: 7.2514
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000418.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.53.8e-2898182187
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW++ e+laL+++r++m+ ++++++ k plWeevs+km e g++r +k+Ckek+en+ k++k+++e+++ r++++  t+
  FANhyb_rscf00000418.1.g00003.1  98 RWPRPETLALLKIRSDMDAEFKAASPKLPLWEEVSRKMGEAGYSRDAKKCKEKFENIYKYHKRTRESRGARSAGK--TY 174
                                     8********************************************************************986555..6* PP

                        trihelix  80 pyfdqlea 87 
                                     +yf+qlea
  FANhyb_rscf00000418.1.g00003.1 175 KYFEQLEA 182
                                     ******85 PP
2trihelix90.61.7e-28431515186
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW+++ev +Li++r++ + +++++ +k++lWee+++ m++ g+ r++k+Ckekwen+nk+y+++k+++kkr +e+s+tc
  FANhyb_rscf00000418.1.g00003.1 431 RWPREEVSDLIRLRSNYDLQYQENGSKGHLWEEIAASMKKLGYDRNAKRCKEKWENINKYYRRLKDSNKKR-PEDSKTC 508
                                     8*********************************************************************8.99***** PP

                        trihelix  80 pyfdqle 86 
                                     +y + l+
  FANhyb_rscf00000418.1.g00003.1 509 AYVEMLD 515
                                     **99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1795157IPR001005SANT/Myb domain
CDDcd122032.15E-2397162No hitNo description
PfamPF138376.8E-1797183No hitNo description
PROSITE profilePS500906.4797155IPR017877Myb-like domain
PROSITE profilePS500907.898424488IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-5427487IPR009057Homeodomain-like
SMARTSM007170.0087428490IPR001005SANT/Myb domain
PfamPF138371.8E-20430517No hitNo description
CDDcd122031.06E-25431495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAGIRNAVCL SISVPIVLGV ETKARSKRVR HGGWLTMVYV LGLIWASIGC VKGLGPILFE  60
PDRSAEEVAG DGGSVSVGLE EEERAGLEQG YRNWAGNRWP RPETLALLKI RSDMDAEFKA  120
ASPKLPLWEE VSRKMGEAGY SRDAKKCKEK FENIYKYHKR TRESRGARSA GKTYKYFEQL  180
EAIEQHHSEH PPPAETVQAS TAETAAASPK DGVSNAIPCS SMQHQLSSFV DNSTPTTSCS  240
SKESEGTHKK KRRVTEFFEK LMKQVIDKQE NLQTKFVEVL DKYEQERIAR EEAWKMQELT  300
RIERERELLA QERSVAAAKD AAVLAFLQKF SEQAASVNLP GQSCSVQMPN QPSSVHLPLQ  360
ACSVQLPNQV SLAQMPVQAS AVRVQMPANS SVSNTVSDEQ KKDEDWELVR RSLESPDKNN  420
GRSRTPISST RWPREEVSDL IRLRSNYDLQ YQENGSKGHL WEEIAASMKK LGYDRNAKRC  480
KEKWENINKY YRRLKDSNKK RPEDSKTCAY VEMLDALYNK KNSKGENQAD KNYDLRPEEL  540
LMHMMSGQEE QQQQPESVTQ NGDSQNVEKI QGDNGSIEGV GDVAGDGYRI VAANPSPMEQ  600
DNPSVAIMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248252KKKRR
2248253KKKRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306599.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A2H4NFW30.0A0A2H4NFW3_FRAAN; Trihelix transcription factor GT-2E
STRINGXP_004306599.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-94Trihelix family protein