PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000407.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 1815aa    MW: 200590 Da    PI: 5.6576
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000407.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.9e-08585605525
                                     --SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                     +C++f ++G+C +GdrC F+H
  FANhyb_rscf00000407.1.g00004.1 585 PCDNFVKNGFCIRGDRCLFSH 605
                                     7******************** PP
2HSF_DNA-bind96.43e-30146915782102
                                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.... CS
                    HSF_DNA-bind    2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.... 74  
                                      Fl+k++++++d+e++ ++sws++ +sf+v d +ef+k++LpkyFkhsnfaSFvRQLn+Y  +   ++  + +s    
  FANhyb_rscf00000407.1.g00004.1 1469 FLNKTFQVVDDPETDPIVSWSQDHQSFIVRDCHEFSKTILPKYFKHSNFASFVRQLNTYLLQLKFESLLQFNSymil 1545
                                      9**********************************************************887665555554555667 PP

                                      .....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind   75 .....kekiweFkhksFkkgkkellekikrkks 102 
                                           +++ weF+++ F+ gkk+ll++ikr+++
  FANhyb_rscf00000407.1.g00004.1 1546 gfrkvDPDRWEFANEGFQGGKKQLLKSIKRRSR 1578
                                      7665449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.868526553IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5526551IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048527552IPR000571Zinc finger, CCCH-type
SMARTSM003560.012555581IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263555582IPR000571Zinc finger, CCCH-type
SMARTSM003560.024583607IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5584609IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4585606IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5585605IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.948585608IPR000571Zinc finger, CCCH-type
HamapMF_0006025.08410381336IPR030048Survival protein SurE
SuperFamilySSF641676.54E-5210391239IPR002828Survival protein SurE-like phosphatase/nucleotidase
Gene3DG3DSA:3.40.1210.109.9E-6910401246IPR002828Survival protein SurE-like phosphatase/nucleotidase
PfamPF019758.1E-4410401233IPR002828Survival protein SurE-like phosphatase/nucleotidase
SuperFamilySSF641676.54E-5212741329IPR002828Survival protein SurE-like phosphatase/nucleotidase
Gene3DG3DSA:3.40.1210.109.9E-6912801328IPR002828Survival protein SurE-like phosphatase/nucleotidase
SuperFamilySSF467855.71E-2714641576IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3214651576IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-4614651576IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1214691492IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2614691576IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1215071519IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1215201532IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008252Molecular Functionnucleotidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1815 aa     Download sequence    Send to blast
MEKPAETLMS FPPHRRRSLK SETHRILVRI LSHCYDVSQL PNQNVPPELN QDNGSNELEE  60
ATGKEGGGNV EFGEPDSMEC DDSAAQQILV ANERCDADGS RERNDQIEDF FSVEGQMDAM  120
DFGIDFGDLE LGPGETLMDE LEKIVNGSDD NTPKPSTGSG IANDKVEFLS NQEQCEDSRH  180
NATIGPVNAD QVVIGEIQNG GESNERMHSV LKSSALDVEP IIQQKEMETS VSSGGAEESL  240
IPITEVAQFK APEDFSQDVP GAFGFSLDKN MVGDASKPSG SRGQSLSQIA NGLEEEHEML  300
PKENKMEMLC TRNAVNSPNH MSDVEEGEIS DDEGMDDRST DMILHDTVRS EENNEVQILK  360
DVDDPREHSG KEALVKEFDS SSFLRSIADN VQSPRGEEIR ESRTKTIGGP GVVQGKTMEA  420
IKEGGYDPVL ESRRIEEKNS GIVRGIGFPE ACTNNQASHE KISENNEAGS CGTTYEDEGD  480
ADAPKKRKRP SKEKKQRKKA KERKKRAEMN RKQGVNRLKL HCIEKPKPVV FCRHYIAGRC  540
HEGDKCKFSH DTVPLTKSKP CCHFARNSCL KGDDCPFDHQ LSKYPCDNFV KNGFCIRGDR  600
CLFSHKKVQL LLANLNRCLP PCRGSSRSAQ VKIGSPSQKN SHALPHSTGT HSHNNTELIM  660
ARTLLEQPTM STKEFSFLST GKPSLVHSSM SKQGVSAPDR NTGAKAGNLM QQSPSSSIPN  720
TRENIMITPP AVTPKGINFL SFRKASPDGS IGKDQNHHQT SQSVSETVQN SNVAPKVIQP  780
AQPKAADFLS VGKAPLANSS GGNPFNLTST SDNGNSTRFG EGKSVFDKPQ ISSAISSRLL  840
PSPLTSGQSS DYTASRFKDT VNQRALCSTL AFAAKYESKK TNQSIGSTFT QVDRETKQND  900
SGKAFNILDF LSRLNGKMSF CTQSEDCFGQ FDQNKAQGNL RHLWFPQNQQ MQWSSTVENW  960
NHPPVTFGVN LSKSPMTTSM KSNFMPPSLI SNLQQVLALK SDATEKHASE PDKVSCHSSS  1020
SSSCCSLLPS EDKQCPKPVV LVTNGEGIDS PGLTFLVQAL LDSHLDVYVC APKSDRSVAG  1080
HSVTVGETIS VSSAQINGTT AFEVSGTPAD CVSLALSGAL FSNFSRPTLV VSGINRGSSS  1140
GINLFYSGAV AGAREALLCG VPSLCISMNW KKDVSCESDM KDAAAVCSPL IYATVKGIQD  1200
GVFPNSCLLN IEIPWCPSTN KGFKVTKQSQ WSQQSLGIQL AQLGREASIA GAARRLNSQH  1260
KNVEIESVGV ARKMSSQKTI KFFRLEFLEE QQENADEDLD IRALEDGFVT ITPICLSPTV  1320
QSEIQTSVSN WIAGALSIPF LVNPVSNTKK KWSFLLVVMD LAHHFHLRSQ ISQPKEAPHE  1380
AVVVKEEEEE EEALNCKGGD FHGSSSNEKL MESKPEVVQI KEESIDFVVD DYDGRDCFNY  1440
GFSGSYSSSS SKVLPKPMEC LLENGPPPFL NKTFQVVDDP ETDPIVSWSQ DHQSFIVRDC  1500
HEFSKTILPK YFKHSNFASF VRQLNTYLLQ LKFESLLQFN SYMILGFRKV DPDRWEFANE  1560
GFQGGKKQLL KSIKRRSRYN RQPQGSNVSV NSTKKARLEA QLETLKKDQD VLKDEILNLK  1620
QQQKYSQHQL TAFEERIQSS ECKQQSLLLF LTKTTREPNF VERLMQKRVM KRELEEGDLG  1680
KRRRLISAQG FEDFDDCGDQ AQVFADRLPE AELATQQQET PLPASLVDKS CSSVQNNKPQ  1740
AEVHYVYHDV SKKLLDENSV FDDECAVNYS NVYQELEDLI TRQHDFDDLI AKPHDWSGYV  1800
SNYLVEQAGC VGSMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ksq_A3e-221040122731825'-nucleotidase SurE
5ksq_B3e-221040122731825'-nucleotidase SurE
5ksr_A3e-221040122731825'-nucleotidase SurE
5ksr_B3e-221040122731825'-nucleotidase SurE
5ksr_C3e-221040122731825'-nucleotidase SurE
5ksr_D3e-221040122731825'-nucleotidase SurE
5kss_A3e-221040122731825'-nucleotidase SurE
5kss_B3e-221040122731825'-nucleotidase SurE
5kst_A3e-221040122731825'-nucleotidase SurE
5kst_B3e-221040122731825'-nucleotidase SurE
5kst_C3e-221040122731825'-nucleotidase SurE
5kst_D3e-221040122731825'-nucleotidase SurE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483489PKKRKRP
2486505RKRPSKEKKQRKKAKERKKR
315691575LKSIKRR
416801684KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460247.10.0PREDICTED: zinc finger CCCH domain-containing protein 65
TrEMBLA0A2P6R8380.0A0A2P6R838_ROSCH; Putative transcription factor C3H family
STRINGXP_004288957.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-67heat shock transcription factor A2