PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000398.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 764aa    MW: 86461.5 Da    PI: 8.7406
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000398.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.93.4e-11486510226
                         G2-like   2 prlrWtpeLHerFveaveqLGGsek 26 
                                     pr+rWtp+LH++Fv+av++LGG+++
  FANhyb_rscf00000398.1.g00005.1 486 PRIRWTPDLHRCFVHAVDSLGGEDN 510
                                     8*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134979.1351294IPR012133Alpha-hydroxy acid dehydrogenase, FMN-dependent
Gene3DG3DSA:3.20.20.701.4E-10446IPR013785Aldolase-type TIM barrel
SuperFamilySSF513952.44E-814290No hitNo description
CDDcd028091.83E-1178286No hitNo description
PfamPF010707.6E-61446IPR000262FMN-dependent dehydrogenase
Gene3DG3DSA:3.20.20.702.1E-10347290IPR013785Aldolase-type TIM barrel
PfamPF010701.8E-9247289IPR000262FMN-dependent dehydrogenase
PROSITE patternPS005570187193IPR008259FMN-dependent alpha-hydroxy acid dehydrogenase, active site
Gene3DG3DSA:1.10.10.602.1E-9483513IPR009057Homeodomain-like
SuperFamilySSF566724.89E-8541717No hitNo description
CDDcd092723.54E-75612751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MGEVTNVSEY EAIAKQKLPK MVYDYYASGA EDQWTLAENR NAFSKILVEE VASTGPGIRF  60
FQLYVYKDRH VVAQLVRRAE RAGFKAIALT VDTPRLGRRE ADIKNRFTLP PFLTLKNFEG  120
LDLGKMDKAN DSGLASYVAG QIDRSLSWKD VQWLQTITKL PILVKGVLTA EDARLAVQSG  180
AAGIIVSNHG ARQLDYVPST IMALEEVVKA AQGRIPVFLD GGVRRGTDVF KALALGASGI  240
FIGRPVVFSL AAEGEAGVRK VLQMLREEFE LTMALSGCRS LKEITRNHIV ADWDAPRPVP  300
SFPWMYKLKF IECMRYVVPV KKRQCFVIPE QLRYSKLDSL HVPAALNLSV ISTAMDATFP  360
PWDRYVSPLL GETLIYWLKC PSQDDLKLSL EDDDKMSKGV TFSLFMLFPV VQLGEGSSFR  420
RSVDNGQQLQ LQDTPHFSSY ENHETRNEPQ QVQVHRENLP AEMMILQRPT GPSIAMLPHV  480
SSNRVPRIRW TPDLHRCFVH AVDSLGGEDN LLKKYRMGDC KLISTPMAFN EKLRKDDGGE  540
KIDAKMYRSL VGSLIYLTNT RPDLMHPVSI ISRFMNEPRK SHFAAAKRIL RYLQGTKNHG  600
IKYEKENGAK LVGYTDSDWA GCLDDRKSTS GYIFCLGSNV ISWSSNKQDT VALSSTEAEY  660
IAANECACEA VWLRRILMDL QLEQEEPTII YCDNMSAISL SRNSVFHNRT KHIELRFYKI  720
IEWVSKGEIY LRFINTYDQP ADVLIKSVSK EKFDNFKTML KITN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zbm_A1e-16713001369Glycolate oxidase
5zbm_B1e-16713001369Glycolate oxidase
5zbn_A1e-16713001369Glycolate oxidase
5zbn_B1e-16713001369Glycolate oxidase
5zbn_C1e-16713001369Glycolate oxidase
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-08G2-like family protein