PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000382.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 386aa    MW: 43182.6 Da    PI: 7.9047
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000382.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.6e-36261182103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         we
  FANhyb_rscf00000382.1.g00003.1  26 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WE 95 
                                     9*****************************************************************99.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F+++ Fkkg+k+ll++i+r+k++
  FANhyb_rscf00000382.1.g00003.1  96 FANEFFKKGEKHLLCEIHRRKTA 118
                                     ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3818110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.7E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MALMIDNCGE GILLSLDSHK SVPAPFLTKT YQLVDDPATD HIVSWGEDDT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHLLC EIHRRKTAQP  120
TQLPINHHQY HPHSPLGSHH VVTGPGFFPF PRGSNSPSDS DDFPNWCDDS PPPLVSSPPS  180
GCGGGPLNTG YCSNVATTTT VTALSEDNER LRRSNTMLMS ELNHMRKLYN DIIYFVQNHV  240
KPVAPSNSYP GSLLLCNPTQ NTLNPNNSSA AIHKPLNQVF GYHNNPKQTQ PHHQPMAHVM  300
MNNNVNVSSP TTAKSTSSVT IIEDRPGNNN GCKTKLFGVP LLHSKKRLHP EYNNGSNHTA  360
MEATKARLIL EKDHDLGLHL MPPSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-212211726131Heat shock factor protein 1
5d5v_B3e-212211726131Heat shock factor protein 1
5d5v_D3e-212211726131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291096.20.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-117HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1W6LWL30.0A0A1W6LWL3_FRAAN; Heat shock transcription factor protein 9
STRINGXP_004291096.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-113heat shock transcription factor B4