PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000361.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 388aa MW: 43838.3 Da PI: 6.5304

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000361.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.2e-11	101	130	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 ++rr+++NReAAr+sR RKka++++Le+ FANhyb_rscf00000361.1.g00004.1 101 TVQRRLEQNREAARKSRMRKKAYVQQLETS 130 689************************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-4	97	186	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	102	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.13E-7	103	134	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.6E-9	103	143	No hit	No description
PROSITE pattern	PS00036	0	104	119	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-27	190	262	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MSYPSTQFAS SRQMGIYEPF RQVGVWRETF SGGNSSNIGA STIVEVDSRI DNKIGFGSPE 60 PMGPSGNDQE SNRSADKSLE LYLKIDMLYS YALIPSIVSI TVQRRLEQNR EAARKSRMRK 120 KAYVQQLETS RFKLAQLELE LDRTRKQAAY GGSSFGGSHM GYNGIVSSGI TTFELEYGHW 180 VEEQHRQNIE LRNALQEHAT EIELRILVEG GLNHYATLFR MKADAAKADI FYLLSGIWRT 240 SVERYFHWIG GFRPSELLNI LESQLEPLTE PQSLDFYNLK QSSQQAEDAL SQGMDKLQQT 300 LAKTLEADQI LSGETYGSQM AAAIEKFEAL ESFVSQADHL RQQTLQQMSR ILTTHQAARG 360 LLALGEYFQR LRALSSLWTA RPREPPAA

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MSYPSTQFAS SRQMGIYEPF RQVGVWRETF SGGNSSNIGA STIVEVDSRI DNKIGFGSPE  60
PMGPSGNDQE SNRSADKSLE LYLKIDMLYS YALIPSIVSI TVQRRLEQNR EAARKSRMRK  120
KAYVQQLETS RFKLAQLELE LDRTRKQAAY GGSSFGGSHM GYNGIVSSGI TTFELEYGHW  180
VEEQHRQNIE LRNALQEHAT EIELRILVEG GLNHYATLFR MKADAAKADI FYLLSGIWRT  240
SVERYFHWIG GFRPSELLNI LESQLEPLTE PQSLDFYNLK QSSQQAEDAL SQGMDKLQQT  300
LAKTLEADQI LSGETYGSQM AAAIEKFEAL ESFVSQADHL RQQTLQQMSR ILTTHQAARG  360
LLALGEYFQR LRALSSLWTA RPREPPAA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300665.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Swissprot	Q93ZE2	1e-145	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A2P6PHZ0	0.0	A0A2P6PHZ0_ROSCH; Putative transcription factor bZIP family
STRING	XP_004300665.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-147	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]