PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000356.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 271aa    MW: 30530.1 Da    PI: 5.0254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000356.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-111992391055
                                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     ++RRd+iNs++  L+ l+P+      +K++ +++Le++veY+k Lq
  FANhyb_rscf00000356.1.g00011.1 199 KKRRDKINSRLRVLQNLVPNG-----TKVDISTMLEETVEYVKFLQ 239
                                     89*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.516189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-10195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-13196252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-11198243No hitNo description
Gene3DG3DSA:4.10.280.103.3E-12199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-8199239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDLAFVPEG LYMFEDEDLI MSQLLADYCS VSSNDLNYQA SSSQVSFANF PSSHECSTAK  60
DMEGIANLYS LRIMATNYHN PEAFHPWDAN STTNSFFSQS EENAGMDQVM RNCNVGDHEV  120
VSENSKKRPC STSVDHVQKN KRNVKSKKTN QKPVLTRNIA DSCSSGDDEP MNANPQQDLS  180
PNARSSRELA IDPQRTYAKK RRDKINSRLR VLQNLVPNGT KVDISTMLEE TVEYVKFLQL  240
QIKLLSSDEL WMYAPVVNNG IGIRVQDLLN S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203KKRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292131.10.0PREDICTED: transcription factor bHLH54-like
TrEMBLA0A498JNG02e-57A0A498JNG0_MALDO; Uncharacterized protein
STRINGXP_004292131.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-40ROOT HAIR DEFECTIVE 6-LIKE 2